JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLSTN2_chr3_139930185_140582397	0/0	t0043	11335	1	1	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	t0044	11335	1	1	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN3_chr12_7125371_7163945	0/1	t0001	1147	294	38	52	156	12	35	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	t0002	1143	30	3	4	15	2	6	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	1/0	t0003	1143	25	22	2	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	t0004	1143	22	22	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	t0005	1147	8	0	5	0	2	1	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	t0006	1143	2	2	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	t0007	1143	2	0	0	2	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	t0008	1147	2	0	2	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	t0009	1143	2	2	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	t0010	1147	1	0	0	1	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	t0011	1147	1	0	1	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	t0012	1143	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	t0013	1143	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	t0014	1147	1	0	0	1	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	t0015	1143	1	0	0	1	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	t0016	1147	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLTA_chr9_36185921_36217059	1/1	t0001	422	268	56	64	110	10	26	copy fasta	CLTA	chr9	36185921	36217059
CLTA_chr9_36185921_36217059	0/0	t0002	422	68	21	6	33	0	8	copy fasta	CLTA	chr9	36185921	36217059
CLTA_chr9_36185921_36217059	0/0	t0003	422	61	12	8	31	2	8	copy fasta	CLTA	chr9	36185921	36217059
CLTA_chr9_36185921_36217059	0/0	t0004	422	1	1	0	0	0	0	copy fasta	CLTA	chr9	36185921	36217059
CLTA_chr9_36185921_36217059	0/0	t0005	422	1	1	0	0	0	0	copy fasta	CLTA	chr9	36185921	36217059
CLTA_chr9_36185921_36217059	0/0	t0006	407	1	1	0	0	0	0	copy fasta	CLTA	chr9	36185921	36217059
CLTB_chr5_176387501_176421539	0/1	t0001	449	251	46	44	126	5	29	copy fasta	CLTB	chr5	176387501	176421539
CLTB_chr5_176387501_176421539	0/0	t0002	449	146	41	24	61	9	11	copy fasta	CLTB	chr5	176387501	176421539
CLTB_chr5_176387501_176421539	0/0	t0003	461	3	3	0	0	0	0	copy fasta	CLTB	chr5	176387501	176421539
CLTB_chr5_176387501_176421539	0/0	t0004	449	2	2	0	0	0	0	copy fasta	CLTB	chr5	176387501	176421539
CLTB_chr5_176387501_176421539	0/0	t0005	461	2	2	0	0	0	0	copy fasta	CLTB	chr5	176387501	176421539
CLTB_chr5_176387501_176421539	1/0	t0006	450	1	0	0	0	0	0	copy fasta	CLTB	chr5	176387501	176421539
CLTB_chr5_176387501_176421539	0/0	t0007	449	1	0	0	1	0	0	copy fasta	CLTB	chr5	176387501	176421539
CLTCL1_chr22_19174473_19296719	0/0	t0001	596	107	42	15	37	4	9	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/1	t0002	596	79	15	22	27	5	9	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	t0003	596	61	11	5	43	0	2	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	1/0	t0004	596	34	5	13	9	3	3	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	t0005	596	18	1	9	7	1	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	t0006	596	15	0	0	13	0	2	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	t0007	596	9	1	3	0	1	4	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	t0008	599	9	8	1	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	t0009	596	8	6	2	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	t0010	596	2	0	0	1	0	1	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	t0011	596	1	0	0	1	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	t0012	596	1	0	0	1	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	t0013	596	1	1	0	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	t0014	518	1	0	0	1	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTC_chr17_59614895_59701956	0/1	t0001	3345	105	28	20	38	2	16	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0002	3341	70	3	7	43	1	16	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	1/0	t0003	3342	27	9	8	6	1	2	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0004	3345	17	16	1	0	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0005	3348	11	9	1	1	0	0	copy fasta	CLTC	chr17	59614895	59701956