JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLTC_chr17_59614895_59701956	0/0	t0006	3345	9	9	0	0	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0007	3345	8	8	0	0	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0008	3342	3	3	0	0	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0009	3345	1	0	0	1	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0010	3345	1	1	0	0	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0011	3345	1	0	0	0	0	1	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0012	3345	1	0	1	0	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0013	3345	1	0	1	0	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0014	3341	1	0	0	1	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0015	3345	1	0	0	1	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0016	3341	1	0	0	1	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0017	3345	1	0	0	0	0	1	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	t0018	3341	1	0	1	0	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTRN_chrX_15622318_15669805	1/1	t0001	684	258	47	54	120	11	24	copy fasta	CLTRN	chrX	15622318	15669805
CLTRN_chrX_15622318_15669805	0/0	t0002	684	16	7	0	7	0	2	copy fasta	CLTRN	chrX	15622318	15669805
CLTRN_chrX_15622318_15669805	0/0	t0003	684	12	12	0	0	0	0	copy fasta	CLTRN	chrX	15622318	15669805
CLTRN_chrX_15622318_15669805	0/0	t0004	684	3	3	0	0	0	0	copy fasta	CLTRN	chrX	15622318	15669805
CLTRN_chrX_15622318_15669805	0/0	t0005	683	1	0	0	1	0	0	copy fasta	CLTRN	chrX	15622318	15669805
CLTRN_chrX_15622318_15669805	0/0	t0006	684	1	1	0	0	0	0	copy fasta	CLTRN	chrX	15622318	15669805
CLTRN_chrX_15622318_15669805	0/0	t0007	684	1	0	0	1	0	0	copy fasta	CLTRN	chrX	15622318	15669805
CLTRN_chrX_15622318_15669805	0/0	t0008	684	1	0	1	0	0	0	copy fasta	CLTRN	chrX	15622318	15669805
CLTRN_chrX_15622318_15669805	0/0	t0009	684	1	0	0	1	0	0	copy fasta	CLTRN	chrX	15622318	15669805
CLTRN_chrX_15622318_15669805	0/0	t0010	684	1	0	1	0	0	0	copy fasta	CLTRN	chrX	15622318	15669805
CLUAP1_chr16_3496004_3544048	1/1	t0001	2842	160	40	26	71	8	13	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0002	2843	63	2	17	23	3	18	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0003	2843	51	15	6	27	0	3	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0004	2841	16	0	8	0	1	7	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0005	2841	10	10	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0006	2842	10	0	0	10	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0007	2844	8	7	0	0	0	1	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0008	2845	8	0	4	0	2	2	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0009	2845	6	0	0	5	0	1	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0010	2841	6	0	1	5	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0011	2846	5	0	0	5	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0012	2843	4	2	2	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0013	2843	3	3	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0014	2845	2	2	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0015	2844	2	2	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0016	2842	2	0	0	2	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0017	2844	2	0	0	2	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0018	2844	2	0	0	1	0	1	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0019	2843	2	0	1	1	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0020	2842	2	2	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0021	2843	1	0	0	1	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0022	2844	1	0	0	1	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0023	2845	1	1	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0024	2844	1	0	0	1	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0025	2842	1	1	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0026	2842	1	0	0	1	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0027	2844	1	0	0	1	0	0	copy fasta	CLUAP1	chr16	3496004	3544048