JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLUAP1_chr16_3496004_3544048	0/0	t0028	2843	1	0	0	1	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0029	2842	1	0	0	1	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0030	2842	1	0	0	0	1	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0031	2842	1	0	0	0	1	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0032	2842	1	1	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0033	2842	1	1	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0034	2843	1	0	0	1	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0035	2843	1	0	0	1	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0036	2842	1	1	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0037	2843	1	0	0	1	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	t0038	2842	1	0	1	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUH_chr17_2684387_2716764	0/1	t0001	1311	349	41	66	186	16	39	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	t0002	1311	19	19	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	t0003	1311	19	19	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	t0004	1311	10	4	3	2	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	t0005	1311	6	6	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	t0006	1311	4	0	0	0	0	4	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	t0007	1311	2	2	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	1/0	t0008	1311	2	0	1	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	t0009	1311	2	1	1	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	t0010	1311	1	0	0	0	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	t0011	1311	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	t0012	1311	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	t0013	1311	1	0	0	0	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	t0014	1311	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	t0015	1311	1	0	1	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	t0016	1311	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUL1_chr18_591988_655182	1/1	t0001	559	278	44	59	131	12	30	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	t0002	554	70	8	9	37	1	15	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	t0003	554	29	24	5	0	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	t0004	559	23	16	4	0	2	1	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	t0005	559	5	0	0	3	2	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	t0006	554	4	4	0	0	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	t0007	559	2	0	0	0	0	2	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	t0008	554	2	0	1	0	1	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	t0009	559	1	0	0	1	0	0	copy fasta	CLUL1	chr18	591988	655182
CLU_chr8_27591917_27619700	1/1	t0001	1400	176	30	44	73	10	17	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0002	1400	94	8	14	58	1	13	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0003	1400	66	6	0	49	0	11	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0004	1400	37	7	15	0	6	9	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0005	1396	30	30	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0006	1400	15	1	0	14	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0007	1400	9	6	2	1	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0008	1400	6	0	0	6	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0009	1400	4	4	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0010	1400	3	0	0	3	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0011	1396	3	2	1	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0012	1396	2	2	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0013	1400	2	0	0	2	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0014	1400	2	2	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700