JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLU_chr8_27591917_27619700	0/0	t0015	1400	2	1	0	0	1	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0016	1400	1	0	1	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0017	1400	1	0	1	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0018	1400	1	1	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0019	1400	1	0	0	1	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0020	1400	1	0	0	1	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0021	1400	1	0	0	1	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	t0022	1400	1	0	0	1	0	0	copy fasta	CLU	chr8	27591917	27619700
CLVS1_chr8_61282970_61506629	1/0	t0001	2408	74	18	21	21	1	12	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/1	t0002	2404	59	18	15	19	1	5	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0003	2408	15	3	4	8	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0004	2404	2	2	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0005	2412	2	0	0	0	1	1	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0006	2408	2	2	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0007	2408	2	2	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0008	2412	2	0	2	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0009	2412	2	2	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0010	2411	2	0	2	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0011	2408	2	1	1	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0012	2404	1	0	1	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0013	2408	1	0	1	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0014	2408	1	0	0	0	0	1	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0015	2404	1	1	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0016	2404	1	1	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0017	2404	1	1	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0018	2408	1	1	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0019	2408	1	1	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0020	2404	1	1	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0021	2404	1	0	0	1	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0022	2411	1	1	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0023	2411	1	0	0	0	0	1	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0024	2408	1	1	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0025	2408	1	0	1	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0026	2391	1	0	0	0	1	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0027	2408	1	1	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0028	2408	1	1	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0029	2408	1	1	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0030	2408	1	1	0	0	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	t0031	2408	1	0	0	1	0	0	copy fasta	CLVS1	chr8	61282970	61506629
CLVS2_chr6_122991235_123077925	0/0	t0001	10236	44	6	6	28	1	3	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0002	10236	33	2	9	13	4	5	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0003	10236	28	4	11	8	1	4	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0004	10235	19	1	3	11	1	3	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/1	t0005	10236	18	2	5	8	0	2	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0006	10236	16	0	1	15	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0007	10240	10	0	1	8	1	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0008	10236	9	9	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0009	10244	7	1	0	1	0	5	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0010	10236	7	5	2	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0011	10236	7	0	0	7	0	0	copy fasta	CLVS2	chr6	122991235	123077925