Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADCY9_chr16_3957653_4121442	0/0	t0110	3918	1	0	1	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0111	3920	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0112	3916	1	0	1	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0113	3914	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0114	3919	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0115	3915	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0116	3913	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0117	3927	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0118	3909	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0119	3897	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0120	3918	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0121	3916	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0122	3921	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0123	3896	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0124	3918	1	0	1	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0125	3916	1	0	1	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0126	3898	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0127	3919	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0128	3917	1	0	1	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0129	3914	1	0	1	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCYAP1R1_chr7_31047308_31116474	0/0	t0001	5227	96	2	18	62	3	11	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	1/0	t0002	5233	57	0	22	20	3	11	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0003	5237	13	11	1	1	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/1	t0004	5225	13	3	1	6	0	2	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0005	5235	11	1	4	3	2	1	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0006	5233	11	0	0	11	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0007	5228	8	4	2	1	0	1	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0008	5235	7	7	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0009	5241	6	4	2	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0010	5237	5	0	4	0	0	1	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0011	5226	5	0	1	3	0	1	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0012	5231	5	5	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0013	5235	4	3	1	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0014	5227	4	0	0	4	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0015	5233	4	4	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0016	5237	3	3	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0017	5225	3	0	0	0	0	3	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0018	5235	3	3	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0019	5233	3	3	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0020	5237	2	1	1	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0021	5232	2	2	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0022	5237	2	0	2	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0023	5239	2	2	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0024	5233	2	0	0	2	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0025	5233	2	2	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0026	5223	2	2	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0027	5227	1	0	0	0	0	1	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0028	5237	1	0	0	0	0	1	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0029	5227	1	0	0	0	1	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0030	5233	1	0	0	0	0	1	copy fasta	ADCYAP1R1	chr7	31047308	31116474