JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLVS2_chr6_122991235_123077925	0/0	t0012	10234	5	1	0	4	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0013	10236	5	0	0	4	0	1	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0014	10236	5	0	0	5	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0015	10235	4	4	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0016	10240	4	4	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0017	10238	4	4	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0018	10240	3	0	0	3	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	1/0	t0019	10236	3	0	2	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0020	10236	3	0	2	0	1	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0021	10242	3	0	3	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0022	10236	3	3	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0023	10236	3	0	2	0	1	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0024	10237	3	3	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0025	10244	3	0	3	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0026	10236	3	3	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0027	10234	3	0	2	0	0	1	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0028	10234	2	2	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0029	10237	2	2	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0030	10236	2	0	2	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0031	10236	2	0	0	2	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0032	10238	2	2	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0033	10236	2	0	0	2	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0034	10236	2	0	0	0	2	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0035	10238	2	2	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0036	10238	2	0	0	0	0	2	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0037	10235	2	0	0	2	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0038	10238	2	2	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0039	10236	2	0	0	2	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0040	10236	2	2	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0041	10244	2	2	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0042	10234	2	2	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0043	10234	2	0	0	2	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0044	10234	2	2	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0045	10245	2	2	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0046	10236	1	0	0	1	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0047	10236	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0048	10236	1	0	0	1	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0049	10235	1	0	0	1	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0050	10236	1	0	0	1	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0051	10236	1	0	0	1	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0052	10235	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0053	10236	1	0	0	0	0	1	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0054	10245	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0055	10236	1	0	0	1	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0056	10238	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0057	10238	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0058	10235	1	0	1	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0059	10235	1	0	1	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0060	10234	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0061	10236	1	0	0	1	0	0	copy fasta	CLVS2	chr6	122991235	123077925