JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLVS2_chr6_122991235_123077925	0/0	t0062	10236	1	0	1	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0063	10236	1	0	0	0	0	1	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0064	10236	1	0	0	1	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0065	10218	1	0	0	1	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0066	10236	1	0	0	0	0	1	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0067	10236	1	0	0	1	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0068	10236	1	0	0	0	0	1	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0069	10244	1	0	0	0	0	1	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0070	10234	1	0	0	0	0	1	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0071	10240	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0072	10240	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0073	10238	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0074	10236	1	0	1	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0075	10235	1	0	1	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0076	10236	1	0	0	0	0	1	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0077	10236	1	0	0	0	0	1	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0078	10236	1	0	0	1	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0079	10236	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0080	10236	1	0	1	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0081	10247	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0082	10238	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0083	10234	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0084	10238	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0085	10236	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0086	10238	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0087	10236	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0088	10234	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0089	10236	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	t0090	10238	1	1	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLXN_chr8_48718391_48740268	1/1	t0001	1469	329	75	59	148	12	33	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0002	1469	25	13	7	0	1	4	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0003	1469	9	0	5	4	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0004	1469	7	0	0	7	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0005	1469	4	0	0	4	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0006	1463	3	0	0	2	0	1	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0007	1469	3	0	1	0	0	2	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0008	1469	2	2	0	0	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0009	1469	2	2	0	0	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0010	1469	2	0	0	2	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0011	1469	1	1	0	0	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0012	1469	1	0	0	1	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0013	1469	1	0	0	1	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0014	1469	1	0	0	1	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0015	1469	1	0	0	0	1	0	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0016	1469	1	0	0	0	0	1	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0017	1469	1	1	0	0	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	t0018	1469	1	0	0	0	0	1	copy fasta	CLXN	chr8	48718391	48740268
CLYBL_chr13_99601690_99897570	1/1	t0001	159	213	76	45	56	12	22	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	t0002	159	5	0	5	0	0	0	copy fasta	CLYBL	chr13	99601690	99897570
CMA1_chr14_24500353_24513265	1/1	t0001	194	389	69	55	217	14	32	copy fasta	CMA1	chr14	24500353	24513265