JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CMA1_chr14_24500353_24513265	0/0	t0002	194	36	18	3	3	4	8	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	t0003	194	3	3	0	0	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	t0004	194	2	0	0	2	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	t0005	194	2	2	0	0	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMAS_chr12_22041218_22070668	1/1	t0001	444	359	92	64	149	10	42	copy fasta	CMAS	chr12	22041218	22070668
CMAS_chr12_22041218_22070668	0/0	t0002	444	72	0	16	43	6	7	copy fasta	CMAS	chr12	22041218	22070668
CMAS_chr12_22041218_22070668	0/0	t0003	444	12	0	0	11	0	1	copy fasta	CMAS	chr12	22041218	22070668
CMAS_chr12_22041218_22070668	0/0	t0004	444	6	6	0	0	0	0	copy fasta	CMAS	chr12	22041218	22070668
CMAS_chr12_22041218_22070668	0/0	t0005	444	1	0	0	1	0	0	copy fasta	CMAS	chr12	22041218	22070668
CMBL_chr5_10272595_10312902	0/1	t0001	3156	143	14	23	89	3	13	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0002	3154	61	5	26	10	8	12	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0003	3154	39	26	9	2	0	2	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0004	3155	35	9	1	19	1	5	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0005	3155	15	0	10	1	0	4	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0006	3156	6	5	1	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0007	3154	6	3	3	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0008	3155	4	3	1	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0009	3156	3	3	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0010	3155	3	3	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0011	3154	3	3	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0012	3156	3	3	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0013	3155	2	0	0	2	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0014	3154	2	0	1	0	0	1	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0015	3155	2	1	1	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0016	3155	2	1	1	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0017	3156	2	2	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0018	3155	1	0	0	1	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0019	3156	1	1	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0020	3156	1	1	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0021	3154	1	1	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0022	3156	1	1	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0023	3156	1	0	1	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0024	3156	1	0	0	1	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0025	3156	1	1	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	1/0	t0026	3156	1	0	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0027	3156	1	1	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0028	3155	1	0	0	1	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0029	3155	1	1	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0030	3155	1	1	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0031	3155	1	1	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0032	3154	1	1	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0033	3154	1	1	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0034	3155	1	1	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0035	3155	1	0	0	0	0	1	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	t0036	3155	1	1	0	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMC1_chr3_28236619_28330142	0/0	t0001	5689	106	27	21	39	5	14	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	1/0	t0002	5689	62	3	13	37	1	7	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0003	5689	52	13	15	16	1	7	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/1	t0004	5688	42	1	13	19	4	4	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0005	5690	10	0	0	8	0	2	copy fasta	CMC1	chr3	28236619	28330142