JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CMC1_chr3_28236619_28330142	0/0	t0006	5687	7	5	2	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0007	5688	7	4	2	1	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0008	5690	6	5	1	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0009	5687	4	4	0	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0010	5690	3	3	0	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0011	5689	2	2	0	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0012	5689	2	0	0	2	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0013	5689	2	0	0	2	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0014	5689	2	0	0	0	1	1	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0015	5690	2	0	0	2	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0016	5690	2	0	0	1	0	1	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0017	5687	2	1	0	1	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0018	5689	1	1	0	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0019	5690	1	0	1	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0020	5689	1	0	1	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0021	5691	1	1	0	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0022	5689	1	0	1	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0023	5689	1	1	0	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0024	5688	1	1	0	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0025	5689	1	0	0	1	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0026	5689	1	0	0	0	0	1	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0027	5689	1	1	0	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0028	5689	1	0	0	1	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0029	5689	1	0	0	1	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0030	5689	1	1	0	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0031	5689	1	0	1	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0032	5688	1	1	0	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0033	5688	1	1	0	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0034	5689	1	0	0	1	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0035	5690	1	1	0	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0036	5691	1	0	0	1	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0037	5688	1	0	0	0	0	1	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0038	5689	1	0	1	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0039	5690	1	1	0	0	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0040	5689	1	0	0	1	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0041	5689	1	0	0	1	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC1_chr3_28236619_28330142	0/0	t0042	5689	1	0	0	1	0	0	copy fasta	CMC1	chr3	28236619	28330142
CMC2_chr16_80961448_81011885	0/0	t0001	9833	76	3	16	41	5	11	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0002	9843	25	0	5	20	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0003	9835	16	4	0	12	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0004	9843	15	0	1	11	0	3	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0005	9839	7	2	4	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0006	9835	7	7	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0007	9845	6	1	0	5	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0008	9843	6	0	2	4	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0009	9833	6	0	0	6	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0010	9859	5	5	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0011	9843	5	0	0	5	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0012	9843	5	0	0	5	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0013	9839	5	0	0	5	0	0	copy fasta	CMC2	chr16	80961448	81011885