JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CMC2_chr16_80961448_81011885	0/0	t0014	9833	5	3	1	0	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0015	9843	4	0	0	4	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0016	9843	4	0	0	4	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0017	9828	4	0	0	4	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0018	9833	4	0	0	4	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0019	9841	4	0	2	2	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0020	9835	4	0	2	2	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0021	9835	3	3	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0022	9841	3	0	1	2	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0023	9841	3	3	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0024	9857	3	0	0	3	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0025	9831	3	0	0	3	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0026	9839	3	0	2	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0027	9825	3	0	0	3	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0028	9833	3	2	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0029	9835	3	0	1	0	1	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0030	9832	2	2	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0031	9832	2	2	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0032	9830	2	2	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0033	9832	2	0	0	2	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0034	9843	2	0	0	1	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0035	9847	2	0	0	2	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0036	9839	2	0	1	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0037	9843	2	0	0	2	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0038	9839	2	0	0	2	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0039	9845	2	0	0	2	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0040	9810	2	2	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	1/0	t0041	9833	2	0	0	0	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0042	9833	2	0	0	2	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0043	9865	2	0	0	0	2	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0044	9863	2	0	2	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0045	9853	2	0	0	2	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0046	9849	2	0	0	2	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0047	9833	2	0	2	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0048	9833	2	0	0	2	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0049	9833	2	0	0	2	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/1	t0050	9833	2	0	0	0	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0051	9833	2	0	0	2	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0052	9833	2	0	2	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0053	9833	2	0	1	0	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0054	9853	1	0	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0055	9863	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0056	9861	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0057	9859	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0058	9853	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0059	9855	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0060	9856	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0061	9842	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0062	9833	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0063	9831	1	0	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885