JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
CMC2_chr16_80961448_81011885	0/0	t0064	9830	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0065	9840	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0066	9839	1	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0067	9849	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0068	9844	1	0	0	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0069	9844	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0070	9846	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0071	9848	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0072	9843	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0073	9845	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0074	9841	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0075	9846	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0076	9843	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0077	9843	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0078	9847	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0079	9847	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0080	9843	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0081	9841	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0082	9839	1	0	0	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0083	9839	1	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0084	9840	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0085	9843	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0086	9841	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0087	9843	1	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0088	9835	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0089	9835	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0090	9832	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0091	9839	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0092	9838	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0093	9841	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0094	9843	1	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0095	9839	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0096	9845	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0097	9841	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0098	9841	1	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0099	9840	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0100	9848	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0101	9850	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0102	9852	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0103	9841	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0104	9833	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0105	9833	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0106	9839	1	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0107	9839	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0108	9839	1	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0109	9855	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0110	9857	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0111	9835	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0112	9833	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0113	9835	1	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885