JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CMC2_chr16_80961448_81011885	0/0	t0114	9835	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0115	9835	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0116	9839	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0117	9838	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0118	9814	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0119	9810	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0120	9824	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0121	9872	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0122	9833	1	0	0	0	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0123	9849	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0124	9859	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0125	9833	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0126	9833	1	0	0	0	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0127	9861	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0128	9848	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0129	9872	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0130	9854	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0131	9842	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0132	9861	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0133	9869	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0134	9859	1	0	0	0	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0135	9851	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0136	9867	1	0	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0137	9865	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0138	9865	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0139	9861	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0140	9851	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0141	9847	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0142	9843	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0143	9833	1	0	0	0	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0144	9833	1	0	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0145	9833	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0146	9836	1	0	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0147	9833	1	0	0	0	1	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0148	9833	1	0	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0149	9841	1	0	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0150	9839	1	0	0	0	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0151	9837	1	0	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0152	9844	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0153	9837	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0154	9841	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0155	9833	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0156	9869	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0157	9833	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0158	9833	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0159	9833	1	0	0	0	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0160	9835	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0161	9837	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0162	9835	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0163	9837	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885