JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CMC2_chr16_80961448_81011885	0/0	t0164	9838	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0165	9835	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0166	9838	1	0	0	1	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0167	9835	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0168	9833	1	0	0	0	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0169	9843	1	0	0	0	0	1	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0170	9869	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0171	9865	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0172	9861	1	1	0	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	t0173	9857	1	0	1	0	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC4_chrX_155056622_155076136	1/1	t0001	675	291	72	52	121	13	31	copy fasta	CMC4	chrX	155056622	155076136
CMC4_chrX_155056622_155076136	0/0	t0002	675	1	0	0	0	0	1	copy fasta	CMC4	chrX	155056622	155076136
CMIP_chr16_81439808_81716762	0/1	t0001	2397	114	44	29	16	6	18	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0002	2397	21	1	0	16	1	3	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0003	2397	17	8	8	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	1/0	t0004	2398	14	10	3	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0005	2396	12	4	2	4	0	2	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0006	2398	9	7	0	2	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0007	2396	8	0	0	8	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0008	2397	7	0	0	7	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0009	2394	6	0	0	6	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0010	2398	4	2	2	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0011	2398	4	0	2	2	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0012	2398	3	1	0	0	0	2	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0013	2397	3	3	0	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0014	2397	3	0	1	1	0	1	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0015	2394	3	0	0	3	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0016	2397	3	1	1	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0017	2401	2	0	0	2	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0018	2396	2	0	0	2	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0019	2399	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0020	2398	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0021	2397	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0022	2399	1	1	0	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0023	2398	1	0	0	0	1	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0024	2397	1	0	1	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0025	2398	1	0	1	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0026	2397	1	0	1	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0027	2397	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0028	2398	1	0	0	0	0	1	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0029	2398	1	1	0	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0030	2396	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0031	2397	1	0	0	0	0	1	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0032	2398	1	0	1	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0033	2400	1	1	0	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0034	2395	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0035	2399	1	0	1	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0036	2397	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0037	2399	1	1	0	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0038	2396	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762