JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CMIP_chr16_81439808_81716762	0/0	t0039	2398	1	1	0	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0040	2398	1	0	1	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0041	2401	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0042	2396	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0043	2398	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0044	2397	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0045	2397	1	1	0	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0046	2398	1	1	0	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0047	2398	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0048	2394	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0049	2398	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0050	2397	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	t0051	2401	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMKLR1_chr12_108283046_108344311	1/1	t0001	4367	74	14	13	27	6	12	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0002	4368	55	7	4	35	0	9	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0003	4369	43	0	6	36	0	1	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0004	4367	30	19	7	0	1	3	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0005	4367	25	1	14	5	2	3	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0006	4368	22	0	2	13	2	5	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0007	4368	16	16	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0008	4369	9	0	2	5	0	2	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0009	4368	9	1	4	0	2	2	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0010	4369	8	0	0	8	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0011	4367	6	4	1	0	0	1	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0012	4369	5	0	0	5	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0013	4367	5	0	0	5	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0014	4367	5	0	3	0	1	1	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0015	4368	4	0	0	4	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0016	4369	4	4	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0017	4368	4	1	3	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0018	4370	4	0	1	1	0	2	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0019	4367	4	3	1	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0020	4369	4	0	0	4	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0021	4367	3	3	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0022	4367	3	0	0	3	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0023	4357	3	0	0	3	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0024	4369	2	1	1	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0025	4369	2	0	0	2	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0026	4369	2	2	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0027	4368	2	1	0	0	0	1	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0028	4367	2	2	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0029	4368	2	1	0	0	0	1	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0030	4368	2	0	2	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0031	4369	2	1	1	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0032	4369	2	0	0	2	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0033	4369	2	0	0	2	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0034	4368	2	0	2	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0035	4368	2	0	1	0	0	1	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0036	4368	2	2	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0037	4369	2	0	0	2	0	0	copy fasta	CMKLR1	chr12	108283046	108344311