JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CMKLR1_chr12_108283046_108344311	0/0	t0038	4370	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0039	4371	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0040	4369	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0041	4367	1	0	0	0	0	1	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0042	4367	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0043	4369	1	0	0	1	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0044	4368	1	0	0	1	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0045	4367	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0046	4368	1	0	0	0	1	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0047	4369	1	0	0	1	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0048	4367	1	0	0	1	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0049	4368	1	0	0	0	0	1	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0050	4368	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0051	4369	1	0	0	1	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0052	4368	1	0	0	0	0	1	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0053	4368	1	0	0	0	1	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0054	4367	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0055	4367	1	0	0	1	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0056	4367	1	0	0	1	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0057	4369	1	0	0	0	0	1	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0058	4367	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0059	4367	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0060	4369	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0061	4367	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0062	4370	1	0	1	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0063	4369	1	0	1	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	t0064	4403	1	0	0	1	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR2_chr2_206170316_206218371	1/1	t0001	958	239	63	40	93	10	31	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	t0002	958	32	0	1	24	3	4	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	t0003	958	30	4	21	0	3	2	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	t0004	958	7	7	0	0	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	t0005	958	3	3	0	0	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	t0006	958	2	2	0	0	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	t0007	958	2	0	0	2	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	t0008	958	1	0	0	0	0	1	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	t0009	958	1	1	0	0	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	t0010	958	1	0	0	1	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	t0011	958	1	0	0	1	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	t0012	958	1	0	0	1	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	t0013	958	1	0	0	1	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	t0014	1188	1	0	0	1	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMPK1_chr1_47328790_47383839	0/0	t0001	2251	103	42	13	27	6	15	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/1	t0002	2251	88	1	22	45	3	16	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0003	2252	65	3	14	41	3	4	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0004	2251	60	4	2	47	0	7	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0005	2251	10	9	1	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	1/0	t0006	2251	7	5	1	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0007	2251	6	6	0	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0008	2244	3	3	0	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0009	2252	3	3	0	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839