Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADCYAP1R1_chr7_31047308_31116474	0/0	t0031	5237	1	0	0	0	1	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0032	5236	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0033	5239	1	0	1	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0034	5243	1	0	1	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0035	5233	1	0	1	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0036	5231	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0037	5229	1	0	1	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0038	5234	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0039	5239	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0040	5237	1	0	0	0	0	1	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0041	5225	1	0	1	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0042	5227	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0043	5227	1	0	0	1	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0044	5228	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0045	5223	1	0	0	1	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0046	5227	1	0	0	1	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0047	5227	1	0	1	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0048	5227	1	0	0	0	0	1	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0049	5228	1	0	0	1	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0050	5229	1	0	0	0	0	1	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0051	5231	1	0	0	1	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0052	5232	1	0	0	1	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0053	5229	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0054	5229	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0055	5231	1	0	0	0	0	1	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0056	5227	1	0	0	1	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0057	5231	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0058	5235	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0059	5223	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0060	5221	1	0	0	1	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0061	5225	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0062	5229	1	0	0	1	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0063	5227	1	0	0	1	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0064	5228	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0065	5227	1	0	0	1	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0066	5232	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0067	5237	1	0	1	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0068	5235	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0069	5227	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0070	5235	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0071	5235	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0072	5233	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1R1_chr7_31047308_31116474	0/0	t0073	5233	1	1	0	0	0	0	copy fasta	ADCYAP1R1	chr7	31047308	31116474
ADCYAP1_chr18_899871_917172	0/0	t0001	2713	42	1	10	28	0	3	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0002	2721	35	2	3	25	0	5	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0003	2712	34	4	8	12	6	4	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0004	2723	29	3	3	21	0	2	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0005	2717	20	0	4	16	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0006	2717	19	0	0	19	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0007	2725	17	2	5	8	0	2	copy fasta	ADCYAP1	chr18	899871	917172