JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CMPK1_chr1_47328790_47383839	0/0	t0010	2251	3	3	0	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0011	2251	3	3	0	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0012	2251	2	2	0	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0013	2251	2	2	0	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0014	2252	2	2	0	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0015	2251	2	2	0	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0016	2251	1	1	0	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0017	2252	1	0	1	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0018	2251	1	0	0	1	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0019	2251	1	0	0	1	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	t0020	2251	1	1	0	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK2_chr2_6843316_6870907	0/0	t0001	1746	277	37	58	140	12	30	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/1	t0002	1746	56	20	7	18	3	7	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0003	1746	11	11	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	1/0	t0004	1746	9	8	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0005	1746	7	7	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0006	1746	5	0	0	5	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0007	1746	5	5	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0008	1746	3	0	0	3	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0009	1746	3	3	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0010	1746	2	0	2	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0011	1746	2	0	0	2	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0012	1746	2	0	0	2	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0013	1746	2	0	0	2	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0014	1746	1	1	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0015	1746	1	0	1	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0016	1761	1	1	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0017	1746	1	0	0	0	1	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0018	1746	1	0	0	0	0	1	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0019	1746	1	1	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0020	1746	1	1	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	t0021	1746	1	1	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMSS1_chr3_99812862_100186732	0/0	t0001	3463	77	19	16	28	4	10	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0002	3462	71	16	13	28	4	10	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0003	3457	32	1	13	6	1	11	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0004	3463	15	2	1	5	1	6	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0005	3463	8	8	0	0	0	0	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0006	3462	7	7	0	0	0	0	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0007	3463	3	2	1	0	0	0	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0008	3462	3	0	0	3	0	0	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0009	3462	3	3	0	0	0	0	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0010	3462	2	2	0	0	0	0	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0011	3463	1	1	0	0	0	0	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0012	3463	1	0	0	0	0	1	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0013	3463	1	0	0	0	1	0	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0014	3463	1	0	0	0	0	1	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0015	3463	1	0	1	0	0	0	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0016	3463	1	0	1	0	0	0	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0017	3457	1	0	0	0	0	1	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0018	3463	1	1	0	0	0	0	copy fasta	CMSS1	chr3	99812862	100186732