JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CMSS1_chr3_99812862_100186732	0/0	t0019	3462	1	1	0	0	0	0	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0020	3457	1	0	0	0	1	0	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	t0021	3463	1	1	0	0	0	0	copy fasta	CMSS1	chr3	99812862	100186732
CMTM1_chr16_66561439_66584135	1/1	t0001	210	393	90	68	185	14	34	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	t0002	210	2	2	0	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	t0003	192	2	2	0	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	t0004	210	1	0	0	1	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM2_chr16_66574463_66593275	1/1	t0001	302	410	98	70	192	16	32	copy fasta	CMTM2	chr16	66574463	66593275
CMTM3_chr16_66599704_66618887	1/1	t0001	1353	228	70	36	89	10	21	copy fasta	CMTM3	chr16	66599704	66618887
CMTM3_chr16_66599704_66618887	0/0	t0002	1353	144	15	31	80	5	13	copy fasta	CMTM3	chr16	66599704	66618887
CMTM3_chr16_66599704_66618887	0/0	t0003	1353	45	10	6	23	0	6	copy fasta	CMTM3	chr16	66599704	66618887
CMTM3_chr16_66599704_66618887	0/0	t0004	1353	4	4	0	0	0	0	copy fasta	CMTM3	chr16	66599704	66618887
CMTM3_chr16_66599704_66618887	0/0	t0005	1353	1	0	0	1	0	0	copy fasta	CMTM3	chr16	66599704	66618887
CMTM3_chr16_66599704_66618887	0/0	t0006	1353	1	0	1	0	0	0	copy fasta	CMTM3	chr16	66599704	66618887
CMTM3_chr16_66599704_66618887	0/0	t0007	1353	1	0	0	1	0	0	copy fasta	CMTM3	chr16	66599704	66618887
CMTM3_chr16_66599704_66618887	0/0	t0008	1353	1	0	0	0	1	0	copy fasta	CMTM3	chr16	66599704	66618887
CMTM3_chr16_66599704_66618887	0/0	t0009	1353	1	1	0	0	0	0	copy fasta	CMTM3	chr16	66599704	66618887
CMTM4_chr16_66609750_66701743	1/1	t0001	7527	162	46	15	74	8	17	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0002	7525	34	5	6	19	0	4	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0003	7528	15	0	4	11	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0004	7525	14	0	2	9	1	2	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0005	7527	11	10	1	0	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0006	7527	10	0	0	10	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0007	7521	7	3	1	3	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0008	7527	7	0	7	0	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0009	7531	4	4	0	0	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0010	7527	4	0	2	0	1	1	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0011	7521	3	0	0	3	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0012	7527	3	3	0	0	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0013	7527	3	3	0	0	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0014	7527	3	3	0	0	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0015	7525	2	0	0	2	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0016	7521	2	0	0	2	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0017	7527	2	0	0	2	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0018	7527	2	0	2	0	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0019	7527	2	1	0	1	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0020	7527	2	0	1	0	0	1	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0021	7527	2	0	0	0	0	2	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0022	7527	2	0	2	0	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0023	7530	2	0	0	1	0	1	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0024	7531	2	0	0	2	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0025	7525	1	0	0	0	0	1	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0026	7525	1	0	0	1	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0027	7525	1	0	0	1	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0028	7525	1	1	0	0	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0029	7525	1	0	0	1	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0030	7527	1	0	0	0	0	1	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0031	7527	1	0	0	1	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0032	7527	1	0	1	0	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0033	7527	1	0	0	0	0	1	copy fasta	CMTM4	chr16	66609750	66701743