JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CMTM4_chr16_66609750_66701743	0/0	t0034	7527	1	0	1	0	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0035	7527	1	0	0	1	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0036	7527	1	0	0	1	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0037	7527	1	1	0	0	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0038	7527	1	0	0	1	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0039	7527	1	0	0	1	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0040	7527	1	0	0	1	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0041	7528	1	0	0	1	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0042	7527	1	0	0	1	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0043	7530	1	0	1	0	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	t0044	7545	1	0	0	0	0	1	copy fasta	CMTM4	chr16	66609750	66701743
CMTM5_chr14_23372046_23384772	1/1	t0001	492	398	91	76	175	15	39	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	t0002	492	10	3	0	0	3	4	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	t0003	492	5	0	0	5	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	t0004	492	2	2	0	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	t0005	492	2	0	2	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	t0006	492	1	0	0	1	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	t0007	492	1	1	0	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	t0008	492	1	0	0	1	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	t0009	492	1	1	0	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	t0010	492	1	0	0	0	0	1	copy fasta	CMTM5	chr14	23372046	23384772
CMTM6_chr3_32476312_32507852	1/0	t0001	2756	138	25	25	70	4	13	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/1	t0002	2759	82	10	15	36	5	15	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0003	2760	28	0	5	23	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0004	2762	21	7	1	13	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0005	2761	14	10	2	0	1	1	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0006	2756	12	0	3	7	0	2	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0007	2761	8	1	5	1	1	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0008	2755	7	0	0	7	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0009	2762	6	5	0	0	0	1	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0010	2757	5	1	0	1	0	3	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0011	2757	5	4	1	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0012	2761	4	0	0	4	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0013	2760	4	4	0	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0014	2759	4	0	4	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0015	2758	4	0	4	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0016	2756	3	0	1	0	1	1	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0017	2760	3	0	1	1	0	1	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0018	2760	3	3	0	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0019	2757	3	0	1	2	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0020	2759	3	0	0	3	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0021	2755	3	0	1	1	1	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0022	2762	2	1	1	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0023	2760	2	1	1	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0024	2758	2	2	0	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0025	2759	1	1	0	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0026	2757	1	1	0	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0027	2757	1	0	0	1	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0028	2770	1	1	0	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0029	2758	1	1	0	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852