JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CMTM6_chr3_32476312_32507852	0/0	t0030	2770	1	1	0	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0031	2756	1	1	0	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0032	2755	1	0	0	0	1	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0033	2758	1	1	0	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0034	2758	1	0	0	1	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0035	2760	1	0	0	1	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0036	2758	1	1	0	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0037	2756	1	1	0	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0038	2756	1	0	0	0	0	1	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0039	2756	1	0	0	1	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0040	2756	1	0	1	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0041	2755	1	1	0	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	t0042	2756	1	0	0	1	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM7_chr3_32386853_32460528	1/0	t0001	1329	275	56	60	120	5	33	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0002	1329	41	6	3	27	2	3	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0003	1329	11	0	2	7	2	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0004	1329	7	5	2	0	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0005	1329	7	7	0	0	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0006	1329	6	3	0	0	1	2	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0007	1329	5	0	3	2	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0008	1329	3	3	0	0	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/1	t0009	1329	3	0	0	0	2	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0010	1329	2	2	0	0	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0011	1329	2	0	0	2	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0012	1329	1	0	1	0	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0013	1329	1	1	0	0	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0014	1315	1	1	0	0	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0015	1329	1	0	0	1	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0016	1329	1	0	0	1	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	t0017	1329	1	0	1	0	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM8_chr3_32233680_32375321	1/1	t0001	648	295	88	56	107	8	34	copy fasta	CMTM8	chr3	32233680	32375321
CMTM8_chr3_32233680_32375321	0/0	t0002	648	44	0	16	23	0	5	copy fasta	CMTM8	chr3	32233680	32375321
CMTM8_chr3_32233680_32375321	0/0	t0003	648	4	1	0	0	0	3	copy fasta	CMTM8	chr3	32233680	32375321
CMTM8_chr3_32233680_32375321	0/0	t0004	648	1	1	0	0	0	0	copy fasta	CMTM8	chr3	32233680	32375321
CMTR1_chr6_37428221_37486508	1/0	t0001	1527	168	54	23	71	3	16	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	t0002	1527	99	3	15	58	4	19	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	t0003	1526	48	10	7	25	2	4	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/1	t0004	1527	18	11	1	0	1	4	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	t0005	1527	6	6	0	0	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	t0006	1527	6	6	0	0	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	t0007	1527	4	3	1	0	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	t0008	1527	2	0	2	0	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	t0009	1527	2	0	0	2	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	t0010	1527	1	0	1	0	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	t0011	1527	1	0	0	0	0	1	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	t0012	1527	1	0	0	1	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	t0013	1526	1	0	0	1	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	t0014	1526	1	1	0	0	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR2_chr16_71276392_71294402	0/0	t0001	2564	126	41	24	44	8	9	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0002	2564	88	12	6	60	1	9	copy fasta	CMTR2	chr16	71276392	71294402