JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CMTR2_chr16_71276392_71294402	0/0	t0003	2563	58	2	12	40	0	4	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0004	2565	48	1	3	37	0	7	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0005	2564	35	5	10	8	3	9	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0006	2564	26	1	13	5	2	5	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0007	2564	18	18	0	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	1/0	t0008	2563	11	0	0	10	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0009	2564	4	3	1	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0010	2564	3	3	0	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0011	2564	2	2	0	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0012	2565	2	0	0	2	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0013	2565	1	0	1	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0014	2564	1	0	0	1	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0015	2564	1	1	0	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0016	2564	1	1	0	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0017	2564	1	1	0	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0018	2563	1	0	0	0	0	1	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0019	2564	1	0	0	1	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0020	2564	1	0	0	0	0	1	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0021	2563	1	0	0	1	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0022	2563	1	0	0	1	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0023	2565	1	0	0	1	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0024	2564	1	0	0	1	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0025	2564	1	1	0	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0026	2564	1	0	0	0	0	1	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0027	2564	1	0	0	1	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	t0028	2564	1	0	0	1	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMYA5_chr5_79684836_79805222	1/1	t0001	679	174	34	31	73	6	28	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0002	678	114	14	18	71	2	9	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0003	679	24	6	4	11	2	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0004	685	11	10	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0005	684	7	7	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0006	678	6	0	0	5	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0007	685	6	6	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0008	685	3	3	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0009	679	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0010	679	2	0	2	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0011	679	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0012	685	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0013	678	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0014	679	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0015	679	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0016	684	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	t0017	685	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CNBD1_chr8_86861415_87387859	0/0	t0001	314	144	60	36	32	8	8	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	t0002	314	5	5	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	t0003	314	2	2	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	t0004	314	1	1	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD2_chr20_35963590_36035700	1/1	t0001	226	236	59	43	92	12	28	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	t0002	226	32	31	1	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBP_chr3_129162827_129188896	0/1	t0001	2762	222	41	53	88	12	27	copy fasta	CNBP	chr3	129162827	129188896