JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNBP_chr3_129162827_129188896	0/0	t0002	2762	42	0	5	32	1	4	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0003	2761	29	15	3	8	0	3	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0004	2763	28	9	5	10	0	4	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0005	2762	21	1	0	17	0	3	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0006	2762	16	0	3	13	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0007	2763	13	0	3	9	0	1	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	1/0	t0008	2762	8	0	4	1	0	2	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0009	2763	5	3	2	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0010	2761	4	1	0	3	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0011	2762	4	4	0	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0012	2766	3	3	0	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0013	2763	3	0	0	3	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0014	2761	3	0	0	2	1	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0015	2762	2	2	0	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0016	2763	2	2	0	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0017	2767	2	2	0	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0018	2762	1	0	0	1	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0019	2762	1	0	0	0	0	1	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0020	2763	1	0	0	0	0	1	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0021	2762	1	0	0	1	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0022	2763	1	1	0	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0023	2766	1	1	0	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0024	2761	1	0	0	1	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0025	2762	1	0	0	1	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0026	2762	1	0	1	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0027	2762	1	1	0	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0028	2763	1	1	0	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0029	2763	1	1	0	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0030	2762	1	0	0	1	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0031	2761	1	0	0	1	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0032	2764	1	0	0	1	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0033	2763	1	1	0	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0034	2762	1	0	0	0	0	1	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0035	2763	1	0	1	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0036	2762	1	0	0	0	0	1	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0037	2762	1	1	0	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0038	2760	1	1	0	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0039	2762	1	0	0	1	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	0/0	t0040	2765	1	1	0	0	0	0	copy fasta	CNBP	chr3	129162827	129188896
CNDP1_chr18_74529500_74592212	0/0	t0001	2819	117	9	26	60	9	13	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/1	t0002	2818	95	34	16	27	6	11	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0003	2820	43	2	10	24	2	5	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0004	2819	24	11	6	5	0	2	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0005	2819	23	14	2	5	0	2	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0006	2818	13	0	4	4	1	4	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0007	2820	9	4	4	0	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0008	2819	6	0	2	4	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0009	2818	6	0	0	6	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	1/0	t0010	2819	4	3	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0011	2819	3	2	1	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212