JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNDP1_chr18_74529500_74592212	0/0	t0012	2820	3	3	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0013	2819	3	0	0	0	0	3	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0014	2821	3	0	2	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0015	2819	3	3	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0016	2819	3	0	0	3	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0017	2819	2	2	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0018	2817	2	1	0	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0019	2820	2	0	2	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0020	2820	2	2	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0021	2819	2	0	0	1	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0022	2819	1	0	0	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0023	2818	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0024	2819	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0025	2818	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0026	2818	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0027	2820	1	0	0	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0028	2819	1	0	0	0	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0029	2819	1	0	0	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0030	2818	1	0	0	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0031	2820	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0032	2820	1	0	0	0	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0033	2819	1	0	0	0	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0034	2820	1	0	1	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0035	2819	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0036	2819	1	0	0	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0037	2821	1	0	1	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0038	2821	1	0	1	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0039	2820	1	0	0	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0040	2819	1	0	0	0	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0041	2819	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0042	2820	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	t0043	2819	1	0	0	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP2_chr18_74491363_74528454	0/1	t0001	3547	183	21	35	98	10	18	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0002	3547	103	24	21	45	1	12	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0003	3547	16	3	8	0	3	2	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0004	3548	11	0	0	11	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0005	3548	10	10	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0006	3548	9	8	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0007	3547	8	7	1	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0008	3547	7	7	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0009	3547	7	7	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0010	3547	7	0	5	0	1	1	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0011	3547	6	0	4	0	1	1	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	1/0	t0012	3548	5	3	1	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0013	3547	5	0	0	5	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0014	3547	4	0	0	4	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0015	3547	2	0	0	0	0	2	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0016	3547	2	0	0	0	0	2	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0017	3547	2	1	1	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0018	3547	2	1	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454