JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNDP2_chr18_74491363_74528454	0/0	t0019	3547	2	0	0	1	0	1	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0020	3547	2	0	2	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0021	3547	2	2	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0022	3547	2	0	0	2	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0023	3547	1	1	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0024	3547	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0025	3547	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0026	3547	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0027	3547	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0028	3547	1	0	1	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0029	3547	1	0	0	0	1	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0030	3547	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0031	3547	1	0	0	0	0	1	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0032	3547	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0033	3547	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0034	3547	1	1	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0035	3547	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0036	3547	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0037	3548	1	1	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0038	3547	1	0	1	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0039	3548	1	0	1	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0040	3547	1	1	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0041	3547	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0042	3547	1	1	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0043	3547	1	0	0	0	0	1	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0044	3547	1	0	0	0	0	1	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0045	3547	1	0	1	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0046	3547	1	1	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0047	3547	1	0	0	0	0	1	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0048	3547	1	0	0	0	0	1	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	t0049	3547	1	0	0	0	1	0	copy fasta	CNDP2	chr18	74491363	74528454
CNEP1R1_chr16_50020225_50042081	0/1	t0001	1715	198	67	31	75	5	19	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0002	1716	87	5	11	65	3	3	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0003	1713	19	1	5	10	0	3	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0004	1714	19	14	3	0	2	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0005	1716	12	0	4	1	1	6	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0006	1716	11	0	7	4	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0007	1716	7	2	1	1	2	1	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0008	1716	3	2	1	0	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0009	1716	2	0	0	2	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0010	1714	2	1	0	1	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0011	1715	2	0	0	0	0	2	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0012	1715	2	0	1	0	1	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0013	1715	1	0	0	0	0	1	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0014	1715	1	0	0	0	0	1	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	1/0	t0015	1715	1	0	0	0	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0016	1715	1	1	0	0	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0017	1716	1	1	0	0	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0018	1715	1	1	0	0	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0019	1715	1	1	0	0	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081