JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNEP1R1_chr16_50020225_50042081	0/0	t0020	1715	1	0	0	1	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0021	1715	1	0	0	1	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0022	1716	1	1	0	0	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0023	1715	1	1	0	0	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0024	1716	1	0	0	1	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0025	1716	1	0	1	0	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	t0026	1714	1	0	1	0	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNFN_chr19_42382019_42395297	1/1	t0001	195	273	87	44	102	10	28	copy fasta	CNFN	chr19	42382019	42395297
CNFN_chr19_42382019_42395297	0/0	t0002	195	2	2	0	0	0	0	copy fasta	CNFN	chr19	42382019	42395297
CNFN_chr19_42382019_42395297	0/0	t0003	195	1	1	0	0	0	0	copy fasta	CNFN	chr19	42382019	42395297
CNGA1_chr4_47930977_48021681	0/1	t0001	866	154	22	39	61	13	18	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	1/0	t0002	866	110	39	8	57	0	5	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	t0003	866	66	19	6	38	0	3	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	t0004	866	17	1	6	2	3	5	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	t0005	866	6	6	0	0	0	0	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	t0006	866	5	0	5	0	0	0	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	t0007	866	3	0	0	0	0	3	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	t0008	866	2	2	0	0	0	0	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	t0009	866	1	1	0	0	0	0	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	t0010	866	1	0	0	0	0	1	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	t0011	866	1	0	0	0	0	1	copy fasta	CNGA1	chr4	47930977	48021681
CNGA2_chrX_151729746_151750564	1/0	t0001	1291	217	10	39	135	11	21	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	t0002	1291	41	33	1	0	2	5	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	t0003	1285	25	6	5	13	0	1	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	t0004	1291	12	0	0	9	0	3	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	t0005	1285	11	9	2	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	t0006	1285	10	10	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	t0007	1291	7	0	5	0	0	2	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	t0008	1291	4	4	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/1	t0009	1291	4	0	3	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	t0010	1291	1	0	1	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	t0011	1291	1	0	1	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	t0012	1291	1	1	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	t0013	1291	1	0	1	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	t0014	1291	1	1	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA3_chr2_98341456_98403601	1/1	t0001	1463	301	52	60	139	16	32	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	t0002	1463	16	9	0	7	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	t0003	1463	12	11	1	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	t0004	1463	2	2	0	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	t0005	1463	1	1	0	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	t0006	1463	1	1	0	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	t0007	1463	1	0	0	1	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	t0008	1463	1	0	0	1	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	t0009	1463	1	0	1	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	t0010	1450	1	0	0	1	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	t0011	1463	1	0	0	1	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA4_chr11_6234089_6249479	1/1	t0001	189	411	92	73	186	18	40	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	t0002	227	1	0	1	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGB1_chr16_57877340_57976128	0/1	t0001	1898	107	9	14	63	5	15	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	t0002	1901	54	7	10	27	2	8	copy fasta	CNGB1	chr16	57877340	57976128