Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADCYAP1_chr18_899871_917172	0/0	t0008	2725	16	1	3	7	1	4	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0009	2716	12	10	1	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0010	2721	11	1	1	6	1	2	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0011	2716	9	0	2	3	2	2	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0012	2719	9	0	0	8	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0013	2719	8	0	0	8	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0014	2719	8	0	2	5	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0015	2727	8	4	2	2	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0016	2710	7	7	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0017	2711	6	6	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0018	2715	6	1	3	1	1	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0019	2715	6	2	0	4	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0020	2718	6	0	0	6	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0021	2719	6	0	0	6	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0022	2713	5	0	5	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0023	2713	5	0	1	4	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0024	2719	5	3	2	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0025	2718	5	3	2	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0026	2720	5	1	3	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0027	2713	4	2	2	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0028	2722	4	1	0	2	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0029	2712	3	0	3	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0030	2712	3	0	2	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0031	2718	3	2	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0032	2719	3	2	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0033	2723	3	0	0	2	1	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0034	2723	3	1	0	1	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0035	2723	3	0	0	1	1	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0036	2727	3	0	0	2	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0037	2726	3	0	0	2	1	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0038	2729	3	0	0	3	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0039	2719	3	0	0	3	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0040	2713	2	2	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0041	2714	2	1	0	0	1	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0042	2714	2	1	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0043	2714	2	2	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0044	2715	2	0	0	2	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0045	2713	2	0	2	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0046	2714	2	0	0	2	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0047	2719	2	0	0	0	0	2	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0048	2721	2	0	0	2	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0049	2721	2	0	1	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0050	2721	2	0	1	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0051	2723	2	0	0	1	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0052	2721	2	0	0	1	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0053	2726	2	0	1	0	1	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0054	2724	2	0	1	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0055	2726	2	2	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0056	2725	2	1	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0057	2727	2	2	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172