JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNGB3_chr8_86569179_86748634	0/0	t0007	1631	4	0	0	4	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	t0008	1633	2	0	0	2	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	t0009	1633	2	0	0	2	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	t0010	1633	2	2	0	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	t0011	1633	1	0	1	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNIH1_chr14_54418561_54446374	1/0	t0001	4301	208	43	35	110	3	16	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0002	4298	53	8	2	38	0	5	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0003	4296	52	7	7	35	0	3	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/1	t0004	4300	22	13	2	0	4	2	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0005	4300	11	11	0	0	0	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0006	4298	4	0	0	4	0	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0007	4301	3	3	0	0	0	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0008	4300	3	0	2	0	0	1	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0009	4300	3	3	0	0	0	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0010	4298	2	0	0	2	0	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0011	4298	2	0	0	0	0	2	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0012	4301	2	0	1	0	0	1	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0013	4301	2	0	1	0	1	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0014	4300	2	0	0	0	0	2	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0015	4300	2	2	0	0	0	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0016	4300	2	2	0	0	0	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0017	4298	1	0	0	1	0	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0018	4298	1	1	0	0	0	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0019	4301	1	0	0	0	0	1	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0020	4300	1	1	0	0	0	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0021	4300	1	1	0	0	0	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0022	4301	1	0	0	0	0	1	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0023	4301	1	0	0	1	0	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0024	4300	1	1	0	0	0	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH1_chr14_54418561_54446374	0/0	t0025	4301	1	0	0	1	0	0	copy fasta	CNIH1	chr14	54418561	54446374
CNIH2_chr11_66273175_66289206	1/1	t0001	892	408	79	76	195	16	40	copy fasta	CNIH2	chr11	66273175	66289206
CNIH2_chr11_66273175_66289206	0/0	t0002	892	9	9	0	0	0	0	copy fasta	CNIH2	chr11	66273175	66289206
CNIH2_chr11_66273175_66289206	0/0	t0003	892	1	1	0	0	0	0	copy fasta	CNIH2	chr11	66273175	66289206
CNIH2_chr11_66273175_66289206	0/0	t0004	892	1	1	0	0	0	0	copy fasta	CNIH2	chr11	66273175	66289206
CNIH2_chr11_66273175_66289206	0/0	t0005	892	1	0	0	1	0	0	copy fasta	CNIH2	chr11	66273175	66289206
CNIH3_chr1_224611317_224745554	1/1	t0001	2057	230	65	30	99	8	26	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0002	2057	35	0	12	19	0	4	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0003	2057	27	2	4	12	6	3	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0004	2057	8	0	6	0	0	2	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0005	2057	7	0	1	6	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0006	2081	6	0	0	5	0	1	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0007	2081	6	0	0	6	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0008	2063	5	5	0	0	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0009	2057	3	0	0	3	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0010	2057	3	3	0	0	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0011	2057	3	0	0	0	3	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0012	2063	3	3	0	0	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0013	2057	2	2	0	0	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0014	2057	2	2	0	0	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0015	2075	2	2	0	0	0	0	copy fasta	CNIH3	chr1	224611317	224745554