JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNIH3_chr1_224611317_224745554	0/0	t0016	2057	1	0	0	0	0	1	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0017	2057	1	0	0	0	1	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0018	2057	1	0	0	1	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0019	2057	1	0	0	1	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0020	2057	1	0	0	1	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0021	2057	1	1	0	0	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0022	2057	1	0	0	1	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0023	2057	1	0	0	1	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0024	2057	1	1	0	0	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0025	2057	1	0	1	0	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0026	2057	1	1	0	0	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0027	2057	1	1	0	0	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0028	2057	1	1	0	0	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0029	2069	1	1	0	0	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0030	2081	1	0	0	1	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	t0031	2057	1	0	0	0	0	1	copy fasta	CNIH3	chr1	224611317	224745554
CNIH4_chr1_224351879_224384452	0/0	t0001	3873	135	10	35	66	5	19	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/1	t0002	3628	28	9	4	3	0	11	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0003	3968	22	10	4	0	4	4	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0004	3775	20	15	5	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0005	3824	16	0	8	3	2	3	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0006	3776	9	8	1	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0007	3628	9	7	2	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0008	3677	6	0	0	4	0	2	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0009	3481	6	6	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0010	4118	6	6	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	1/0	t0011	3677	4	3	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0012	3726	4	0	0	4	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0013	3628	4	0	1	2	0	1	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0014	3776	4	4	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0015	3922	3	0	1	2	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0016	3827	3	0	3	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0017	3874	3	0	0	3	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0018	3824	2	2	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0019	4311	2	2	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0020	3968	2	0	2	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0021	3873	1	0	0	1	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0022	3873	1	0	0	0	0	1	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0023	3824	1	0	0	0	0	1	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0024	3872	1	0	0	1	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0025	3968	1	0	0	0	0	1	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0026	3873	1	0	0	1	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0027	4167	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0028	3726	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0029	3627	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0030	3530	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0031	3432	1	0	0	0	0	1	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0032	3873	1	0	0	1	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0033	3971	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0034	3677	1	0	1	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452