JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNIH4_chr1_224351879_224384452	0/0	t0035	3873	1	0	0	1	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0036	3579	1	0	1	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0037	3629	1	0	1	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0038	3873	1	0	0	0	0	1	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0039	3774	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0040	3873	1	0	0	0	0	1	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0041	3873	1	0	1	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0042	3821	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0043	4115	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0044	4067	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0045	3920	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0046	3822	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0047	3628	1	0	0	0	0	1	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0048	3873	1	0	0	0	0	1	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0049	3968	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0050	4017	1	0	0	0	1	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0051	3919	1	0	0	0	0	1	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0052	3870	1	0	0	0	0	1	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0053	3723	1	0	1	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0054	3775	1	0	1	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0055	3776	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	t0056	4018	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNKSR1_chr1_26172491_26194884	1/1	t0001	394	331	68	69	147	11	34	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	t0002	394	20	9	8	1	0	2	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	t0003	394	9	7	2	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	t0004	394	9	9	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	t0005	394	1	0	1	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	t0006	394	1	1	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	t0007	394	1	0	0	0	1	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR2_chrX_21369418_21659689	0/0	t0001	2650	48	3	8	25	3	9	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0002	2647	22	2	5	14	1	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0003	2650	13	5	1	5	0	2	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/1	t0004	2653	9	0	5	2	1	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	1/0	t0005	2649	7	0	0	6	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0006	2652	6	6	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0007	2651	5	1	0	4	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0008	2648	4	0	1	3	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0009	2646	4	4	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0010	2652	3	3	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0011	2649	3	3	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0012	2646	3	3	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0013	2653	2	0	1	1	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0014	2673	2	2	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0015	2654	2	0	1	0	0	1	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0016	2652	2	0	1	0	0	1	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0017	2649	2	0	2	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0018	2662	1	0	1	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0019	2664	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0020	2656	1	0	1	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0021	2656	1	0	0	1	0	0	copy fasta	CNKSR2	chrX	21369418	21659689