JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNKSR2_chrX_21369418_21659689	0/0	t0022	2656	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0023	2662	1	0	0	0	0	1	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0024	2655	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0025	2652	1	0	0	1	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0026	2671	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0027	2652	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0028	2653	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0029	2651	1	0	1	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0030	2643	1	0	0	0	0	1	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0031	2652	1	0	0	1	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0032	2652	1	0	0	1	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0033	2650	1	0	0	1	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0034	2651	1	0	0	0	0	1	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0035	2651	1	0	0	1	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0036	2649	1	0	1	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0037	2651	1	0	0	0	0	1	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0038	2646	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0039	2646	1	0	0	1	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0040	2647	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0041	2646	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0042	2634	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	t0043	2628	1	0	0	0	0	1	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR3_chr6_154382515_154515685	0/0	t0001	19411	20	0	4	7	1	8	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0002	19409	19	3	3	10	0	3	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0003	19417	15	0	2	8	3	2	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0004	19412	11	0	0	8	0	3	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0005	19410	10	2	6	1	0	1	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0006	19409	6	0	0	5	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0007	19409	6	0	0	6	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0008	19418	5	0	4	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0009	19416	4	0	2	1	0	1	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0010	19407	4	0	2	0	2	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0011	19413	4	0	0	4	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0012	19410	4	0	2	2	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0013	19406	4	0	0	4	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0014	19411	4	0	0	4	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0015	19418	4	4	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0016	19408	3	0	0	3	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0017	19410	3	0	3	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0018	19417	3	3	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0019	19416	3	2	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0020	19406	3	3	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0021	19412	3	0	0	0	0	3	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0022	19406	3	2	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0023	19408	2	0	0	2	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0024	19411	2	0	0	1	0	1	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0025	19405	2	2	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0026	19417	2	0	0	2	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0027	19412	2	0	0	0	0	2	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0028	19409	2	0	2	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685