JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
CNKSR3_chr6_154382515_154515685	0/0	t0029	19409	2	0	0	2	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0030	19410	2	0	0	1	1	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0031	19409	2	2	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0032	19409	2	0	0	2	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0033	19412	2	0	0	2	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0034	19409	2	2	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0035	19412	2	0	0	2	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/1	t0036	19403	2	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	1/0	t0037	19411	2	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0038	19415	2	2	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0039	19412	2	2	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0040	19401	2	0	2	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0041	19418	2	2	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0042	19416	2	1	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0043	19418	2	0	0	2	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0044	19413	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0045	19407	1	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0046	19409	1	0	0	0	1	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0047	19417	1	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0048	19409	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0049	19402	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0050	19404	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0051	19413	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0052	19412	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0053	19413	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0054	19408	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0055	19411	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0056	19407	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0057	19409	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0058	19405	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0059	19408	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0060	19417	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0061	19411	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0062	19417	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0063	19417	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0064	19411	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0065	19410	1	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0066	19419	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0067	19417	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0068	19417	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0069	19405	1	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0070	19405	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0071	19412	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0072	19417	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0073	19416	1	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0074	19417	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0075	19409	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0076	19422	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0077	19409	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0078	19406	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685