JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
CNKSR3_chr6_154382515_154515685	0/0	t0079	19409	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0080	19412	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0081	19410	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0082	19407	1	0	0	0	1	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0083	19408	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0084	19408	1	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0085	19413	1	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0086	19414	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0087	19414	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0088	19414	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0089	19414	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0090	19408	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0091	19414	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0092	19413	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0093	19412	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0094	19413	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0095	19409	1	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0096	19410	1	0	0	0	1	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0097	19415	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0098	19415	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0099	19410	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0100	19410	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0101	19410	1	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0102	19409	1	0	0	0	1	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0103	19409	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0104	19413	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0105	19411	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0106	19411	1	0	0	0	1	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0107	19411	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0108	19409	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0109	19410	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0110	19409	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0111	19408	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0112	19410	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0113	19407	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0114	19407	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0115	19410	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0116	19411	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0117	19409	1	0	0	0	1	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0118	19414	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0119	19412	1	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0120	19412	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0121	19414	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0122	19408	1	0	0	0	1	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0123	19412	1	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0124	19412	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0125	19409	1	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0126	19418	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0127	19418	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0128	19406	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685