JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNKSR3_chr6_154382515_154515685	0/0	t0179	19419	1	1	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0180	19417	1	1	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0181	19416	1	1	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0182	19415	1	0	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0183	19410	1	0	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0184	19418	1	1	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0185	19417	1	0	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0186	19417	1	0	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0187	19417	1	0	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0188	19418	1	0	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0189	19417	1	0	0	0	1	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0190	19419	1	0	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0191	19419	1	0	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0192	19418	1	0	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0193	19413	1	0	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0194	19412	1	1	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0195	19412	1	1	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0196	19409	1	1	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0197	19412	1	1	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0198	19417	1	1	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0199	19406	1	1	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0200	19411	1	0	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0201	19412	1	1	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	t0202	19401	1	1	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNMD_chr13_52698264_52744820	0/1	t0001	451	303	82	69	109	14	28	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	t0002	451	8	0	1	3	0	4	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	t0003	449	6	0	1	4	0	1	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	1/0	t0004	451	5	3	0	0	0	1	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	t0005	451	4	3	1	0	0	0	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	t0006	451	3	0	0	3	0	0	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	t0007	449	1	0	0	1	0	0	copy fasta	CNMD	chr13	52698264	52744820
CNN1_chr19_11533851_11555323	1/1	t0001	606	266	24	44	153	12	31	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	t0002	606	103	69	11	14	0	9	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	t0003	605	13	1	8	4	0	0	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	t0004	606	3	0	1	0	2	0	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	t0005	606	2	0	2	0	0	0	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	t0006	606	2	0	0	0	0	2	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	t0007	606	1	0	0	0	0	1	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	t0008	606	1	0	0	1	0	0	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	t0009	606	1	0	0	0	0	1	copy fasta	CNN1	chr19	11533851	11555323
CNN2_chr19_1021608_1044065	0/0	t0001	1221	104	17	21	45	8	13	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0002	1221	56	1	0	51	0	4	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	1/1	t0003	1220	51	9	6	28	1	5	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0004	1221	40	4	19	5	2	10	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0005	1220	29	19	4	1	2	3	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0006	1220	17	12	3	1	0	1	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0007	1217	15	0	10	0	1	4	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0008	1218	14	0	1	12	0	1	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0009	1222	10	8	0	2	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0010	1220	9	9	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065