JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNN2_chr19_1021608_1044065	0/0	t0011	1221	8	8	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0012	1221	4	0	1	0	0	3	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0013	1221	3	1	1	0	0	1	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0014	1221	3	0	0	3	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0015	1220	3	1	0	1	0	1	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0016	1218	2	0	0	0	0	2	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0017	1219	2	0	1	0	0	1	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0018	1221	2	0	0	2	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0019	1220	2	2	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0020	1221	2	2	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0021	1217	1	0	1	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0022	1220	1	1	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0023	1220	1	0	1	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0024	1221	1	1	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0025	1221	1	1	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0026	1221	1	0	0	1	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0027	1221	1	0	0	0	0	1	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0028	1222	1	0	0	1	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0029	1222	1	0	0	1	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0030	1220	1	0	1	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0031	1220	1	0	0	1	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0032	1220	1	0	0	1	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0033	1220	1	1	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	t0034	1221	1	1	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN3_chr1_94891957_94932110	0/0	t0001	998	125	8	24	72	9	12	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0002	1000	89	8	21	48	3	9	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	1/0	t0003	1002	35	7	3	24	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0004	998	30	2	7	18	2	1	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0005	1003	28	15	5	5	1	2	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0006	1003	28	14	6	4	2	2	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/1	t0007	1000	22	3	5	10	1	2	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0008	999	8	0	1	6	0	1	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0009	1001	8	4	0	3	0	1	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0010	1004	7	6	1	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0011	1000	7	7	0	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0012	1003	5	0	0	0	0	5	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0013	1002	4	0	0	4	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0014	1004	4	2	2	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0015	1004	3	3	0	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0016	1000	3	3	0	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0017	1001	2	0	0	1	0	1	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0018	1001	2	2	0	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0019	1002	2	1	1	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0020	1004	2	1	0	1	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0021	999	1	0	0	1	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0022	1003	1	0	0	1	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0023	998	1	1	0	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0024	999	1	1	0	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0025	1000	1	1	0	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0026	1000	1	0	0	0	0	1	copy fasta	CNN3	chr1	94891957	94932110