JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNN3_chr1_94891957_94932110	0/0	t0027	1002	1	1	0	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0028	998	1	1	0	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0029	1000	1	0	0	0	0	1	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0030	1002	1	1	0	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0031	1000	1	0	0	1	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	t0032	998	1	0	0	1	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNNM1_chr10_99324356_99399330	0/1	t0001	2848	120	17	27	54	5	16	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0002	2847	45	35	9	0	1	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0003	2848	40	4	0	36	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0004	2847	25	4	7	14	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0005	2847	17	1	2	12	0	2	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	1/0	t0006	2847	12	9	0	0	1	1	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0007	2848	9	8	1	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0008	2850	9	0	0	9	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0009	2847	7	2	0	0	0	5	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0010	2847	3	0	0	3	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0011	2847	3	0	3	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0012	2847	2	2	0	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0013	2849	2	0	1	0	1	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0014	2849	2	0	1	0	0	1	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0015	2848	2	0	1	0	0	1	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0016	2847	2	0	2	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0017	2849	2	2	0	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0018	2848	2	0	0	2	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0019	2849	2	2	0	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0020	2848	2	2	0	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0021	2848	2	0	0	2	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0022	2847	1	1	0	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0023	2847	1	0	0	1	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0024	2848	1	1	0	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0025	2848	1	0	1	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0026	2847	1	1	0	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0027	2848	1	0	0	1	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0028	2848	1	0	1	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0029	2847	1	0	1	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0030	2848	1	0	1	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	t0031	2847	1	1	0	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM2_chr10_102913294_103095222	0/0	t0001	13229	26	2	2	16	1	5	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/1	t0002	13218	16	0	4	7	0	4	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0003	13231	16	1	5	8	2	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0004	13229	14	9	2	2	1	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0005	13229	14	8	3	2	0	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0006	13231	8	0	0	7	0	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0007	13230	8	0	1	7	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0008	13234	7	0	4	0	1	2	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0009	13232	7	0	3	4	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0010	13229	5	1	1	0	0	3	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0011	13230	5	5	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0012	13236	5	1	2	2	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0013	13230	4	1	1	0	2	0	copy fasta	CNNM2	chr10	102913294	103095222