Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADCYAP1_chr18_899871_917172	0/0	t0058	2729	2	0	0	1	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/1	t0059	2729	2	0	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0060	2727	2	0	0	2	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0061	2714	2	2	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0062	2713	1	0	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0063	2709	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0064	2714	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0065	2713	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0066	2715	1	0	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0067	2712	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0068	2714	1	0	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0069	2713	1	0	0	0	1	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0070	2715	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0071	2714	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0072	2712	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0073	2715	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0074	2715	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0075	2715	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0076	2716	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0077	2716	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0078	2717	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0079	2717	1	0	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0080	2717	1	0	0	0	1	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0081	2716	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0082	2717	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0083	2718	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0084	2719	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0085	2718	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0086	2717	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0087	2720	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0088	2720	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0089	2719	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0090	2721	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0091	2719	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0092	2718	1	0	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0093	2719	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0094	2720	1	0	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0095	2721	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0096	2721	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0097	2720	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0098	2720	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0099	2718	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0100	2721	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0101	2720	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0102	2722	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0103	2721	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0104	2720	1	0	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0105	2722	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0106	2720	1	0	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0107	2725	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172