JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNNM2_chr10_102913294_103095222	0/0	t0014	13229	4	0	3	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0015	13232	3	0	0	1	0	2	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0016	13229	3	0	3	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0017	13218	3	1	2	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0018	13235	3	0	1	1	1	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0019	13241	3	2	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0020	13240	3	0	1	2	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0021	13241	3	0	1	2	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0022	13234	2	0	0	1	0	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0023	13236	2	0	0	2	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0024	13229	2	1	1	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0025	13240	2	1	1	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0026	13223	2	2	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0027	13233	2	2	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0028	13211	2	2	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0029	13231	2	0	1	0	0	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0030	13235	2	0	1	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0031	13240	2	0	0	2	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0032	13229	2	0	0	2	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0033	13230	2	0	0	2	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0034	13218	2	0	0	2	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0035	13228	2	0	0	0	1	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0036	13219	2	0	0	1	0	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0037	13229	2	0	0	2	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0038	13237	2	1	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0039	13239	2	0	0	2	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0040	13242	2	1	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0041	13239	2	0	2	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0042	13229	2	0	2	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0043	13218	2	0	0	2	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0044	13231	2	0	2	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0045	13218	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0046	13235	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0047	13235	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0048	13228	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0049	13229	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0050	13233	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0051	13229	1	0	1	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0052	13229	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0053	13230	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0054	13231	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0055	13223	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0056	13239	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0057	13248	1	0	0	0	1	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0058	13249	1	0	0	0	1	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0059	13272	1	0	1	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0060	13254	1	0	0	0	0	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0061	13257	1	0	0	0	0	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0062	13238	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0063	13234	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222