JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNNM2_chr10_102913294_103095222	0/0	t0064	13216	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0065	13228	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0066	13230	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0067	13230	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0068	13232	1	0	0	0	0	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0069	13232	1	0	1	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0070	13233	1	0	0	0	0	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0071	13229	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0072	13236	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0073	13218	1	0	0	0	0	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0074	13237	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0075	13247	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0076	13248	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0077	13230	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0078	13231	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0079	13231	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0080	13229	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0081	13229	1	0	0	0	0	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0082	13229	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0083	13235	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0084	13218	1	0	0	0	1	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0085	13241	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0086	13230	1	0	1	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0087	13227	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	1/0	t0088	13230	1	0	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0089	13234	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0090	13237	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0091	13240	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0092	13242	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0093	13243	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0094	13244	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0095	13248	1	0	1	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0096	13229	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0097	13229	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0098	13242	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0099	13218	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0100	13239	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0101	13219	1	0	1	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0102	13218	1	0	0	0	0	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0103	13229	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0104	13241	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0105	13234	1	0	0	0	0	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0106	13230	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0107	13232	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	t0108	13231	1	0	1	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM3_chr2_96811268_96840382	0/1	t0001	2779	161	18	29	90	3	20	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	1/0	t0002	2777	59	2	14	31	7	4	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0003	2780	28	10	8	8	0	2	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0004	2782	19	10	4	1	1	3	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0005	2777	19	1	13	0	4	1	copy fasta	CNNM3	chr2	96811268	96840382