JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNNM3_chr2_96811268_96840382	0/0	t0006	2776	15	15	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0007	2777	10	10	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0008	2783	7	6	1	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0009	2777	5	0	5	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0010	2779	5	0	0	5	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0011	2776	4	4	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0012	2779	2	2	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0013	2776	2	2	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0014	2779	2	2	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0015	2783	2	2	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0016	2779	2	0	0	0	0	2	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0017	2779	1	0	0	1	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0018	2783	1	0	0	1	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0019	2783	1	1	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0020	2783	1	1	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0021	2780	1	0	1	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0022	2782	1	0	1	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0023	2776	1	1	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0024	2776	1	1	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0025	2776	1	1	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0026	2779	1	0	0	0	0	1	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0027	2779	1	1	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0028	2786	1	1	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0029	2780	1	0	0	0	1	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0030	2779	1	0	0	0	0	1	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0031	2783	1	1	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	t0032	2777	1	0	0	1	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM4_chr2_96755902_96816874	1/1	t0001	2456	149	10	43	69	11	14	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	t0002	2456	39	21	2	14	0	2	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	t0003	2456	29	10	9	9	0	1	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	t0004	2456	19	19	0	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	t0005	2456	13	13	0	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	t0006	2456	8	7	1	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	t0007	2456	4	4	0	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	t0008	2453	2	2	0	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	t0009	2456	1	0	0	0	1	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	t0010	2456	1	0	0	1	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	t0011	2456	1	1	0	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	t0012	2456	1	1	0	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	t0013	2456	1	0	0	1	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	t0014	2456	1	0	0	0	0	1	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	t0015	2456	1	0	1	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNOT10_chr3_32680188_32778875	0/1	t0001	538	336	71	70	146	14	34	copy fasta	CNOT10	chr3	32680188	32778875
CNOT10_chr3_32680188_32778875	0/0	t0002	538	12	11	1	0	0	0	copy fasta	CNOT10	chr3	32680188	32778875
CNOT10_chr3_32680188_32778875	1/0	t0003	538	4	2	1	0	0	0	copy fasta	CNOT10	chr3	32680188	32778875
CNOT10_chr3_32680188_32778875	0/0	t0004	538	1	1	0	0	0	0	copy fasta	CNOT10	chr3	32680188	32778875
CNOT10_chr3_32680188_32778875	0/0	t0005	538	1	1	0	0	0	0	copy fasta	CNOT10	chr3	32680188	32778875
CNOT11_chr2_101247886_101275316	1/1	t0001	983	372	93	66	156	18	37	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	t0002	957	2	0	0	2	0	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	t0003	983	1	0	0	1	0	0	copy fasta	CNOT11	chr2	101247886	101275316