JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNOT11_chr2_101247886_101275316	0/0	t0004	983	1	0	0	0	0	1	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	t0005	983	1	0	0	1	0	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	t0006	983	1	1	0	0	0	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT1_chr16_58514951_58634826	0/0	t0001	1282	233	59	24	116	10	24	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	1/1	t0002	1281	50	19	14	2	5	8	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	t0003	1282	10	0	1	9	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	t0004	1282	7	0	3	0	1	3	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	t0005	1281	2	0	2	0	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	t0006	1282	2	2	0	0	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	t0007	1282	1	0	0	1	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	t0008	1281	1	1	0	0	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	t0009	1282	1	0	0	0	0	1	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	t0010	1282	1	1	0	0	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT2_chr12_70238433_70359993	1/1	t0001	1222	251	81	51	84	8	25	copy fasta	CNOT2	chr12	70238433	70359993
CNOT2_chr12_70238433_70359993	0/0	t0002	1222	11	7	1	3	0	0	copy fasta	CNOT2	chr12	70238433	70359993
CNOT2_chr12_70238433_70359993	0/0	t0003	1222	9	2	7	0	0	0	copy fasta	CNOT2	chr12	70238433	70359993
CNOT2_chr12_70238433_70359993	0/0	t0004	1222	3	0	0	3	0	0	copy fasta	CNOT2	chr12	70238433	70359993
CNOT2_chr12_70238433_70359993	0/0	t0005	1222	2	0	1	0	1	0	copy fasta	CNOT2	chr12	70238433	70359993
CNOT2_chr12_70238433_70359993	0/0	t0006	1222	1	1	0	0	0	0	copy fasta	CNOT2	chr12	70238433	70359993
CNOT2_chr12_70238433_70359993	0/0	t0007	1222	1	0	0	0	0	1	copy fasta	CNOT2	chr12	70238433	70359993
CNOT2_chr12_70238433_70359993	0/0	t0008	1222	1	1	0	0	0	0	copy fasta	CNOT2	chr12	70238433	70359993
CNOT2_chr12_70238433_70359993	0/0	t0009	1222	1	0	0	0	1	0	copy fasta	CNOT2	chr12	70238433	70359993
CNOT3_chr19_54132762_54160681	0/1	t0001	557	218	59	39	87	9	23	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	t0002	557	1	0	1	0	0	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	t0003	557	1	0	0	0	1	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	t0004	557	1	0	0	1	0	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	t0005	557	1	1	0	0	0	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	t0006	557	1	0	0	0	0	1	copy fasta	CNOT3	chr19	54132762	54160681
CNOT4_chr7_135356795_135515102	0/1	t0001	1397	303	41	68	154	9	30	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	1/0	t0002	1397	41	30	4	0	3	3	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	t0003	1397	12	0	0	12	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	t0004	1397	2	0	0	0	0	2	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	t0005	1397	1	1	0	0	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	t0006	1397	1	1	0	0	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	t0007	1397	1	0	0	0	0	1	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	t0008	1397	1	1	0	0	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT6L_chr4_77708387_77824368	0/1	t0001	7082	162	22	31	89	3	16	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0002	7106	20	6	0	12	0	2	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0003	7082	17	1	10	5	1	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0004	7083	12	1	2	3	1	5	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0005	7082	10	9	1	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0006	7086	10	9	1	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0007	7107	8	3	0	5	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0008	7089	8	4	1	0	0	3	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0009	7108	7	4	0	3	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0010	7082	6	6	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0011	7105	4	3	0	1	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0012	7108	4	0	0	4	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0013	7082	4	1	1	0	1	1	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0014	7106	4	1	1	0	0	2	copy fasta	CNOT6L	chr4	77708387	77824368