JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNOT6L_chr4_77708387_77824368	0/0	t0015	7105	3	2	1	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0016	7078	3	0	0	3	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0017	7106	2	2	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0018	7082	2	0	0	2	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0019	7083	2	0	1	0	0	1	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	1/0	t0020	7105	2	0	0	0	1	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0021	7081	2	0	0	2	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0022	7082	1	0	0	1	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0023	7090	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0024	7090	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0025	7090	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0026	7083	1	0	1	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0027	7082	1	0	1	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0028	7083	1	0	0	0	1	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0029	7106	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0030	7106	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0031	7105	1	0	0	1	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0032	7083	1	0	0	1	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0033	7088	1	0	0	0	0	1	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0034	7107	1	0	0	0	0	1	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0035	7109	1	0	1	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0036	7110	1	0	1	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0037	7093	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0038	7094	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0039	7106	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0040	7106	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0041	7088	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0042	7082	1	0	0	1	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0043	7082	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0044	7082	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0045	7082	1	0	1	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0046	7081	1	0	0	1	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0047	7084	1	0	0	0	0	1	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0048	7082	1	0	0	1	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0049	7082	1	0	0	1	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0050	7129	1	0	0	0	0	1	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0051	7105	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0052	7104	1	0	0	0	0	1	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0053	7107	1	0	0	0	0	1	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0054	7082	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0055	7087	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0056	7109	1	0	1	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	t0057	7087	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6_chr5_180489379_180583358	0/0	t0001	4554	66	6	15	34	3	8	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/0	t0002	4548	52	2	11	35	2	2	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/0	t0003	4558	17	1	8	4	1	3	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	1/0	t0004	4546	16	13	1	1	0	0	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/1	t0005	4550	15	11	0	2	0	1	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/0	t0006	4553	15	3	3	5	0	4	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/0	t0007	4549	13	0	1	12	0	0	copy fasta	CNOT6	chr5	180489379	180583358