JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNOT6_chr5_180489379_180583358	0/0	t0058	4548	1	0	0	1	0	0	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/0	t0059	4554	1	0	0	1	0	0	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/0	t0060	4550	1	1	0	0	0	0	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/0	t0061	4550	1	1	0	0	0	0	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/0	t0062	4550	1	1	0	0	0	0	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/0	t0063	4548	1	1	0	0	0	0	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/0	t0064	4554	1	1	0	0	0	0	copy fasta	CNOT6	chr5	180489379	180583358
CNOT7_chr8_17219966_17251857	0/0	t0001	6035	54	14	7	30	1	2	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0002	6038	38	2	4	26	0	6	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0003	6036	34	0	6	21	1	6	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/1	t0004	6038	25	1	6	8	6	3	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0005	6037	20	0	2	11	1	6	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0006	6035	20	1	5	14	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	1/0	t0007	6033	10	8	1	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0008	6036	10	6	0	3	0	1	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0009	6039	9	0	1	8	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0010	6034	7	7	0	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0011	6041	7	3	1	1	1	1	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0012	6036	7	0	0	7	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0013	6040	7	0	0	6	0	1	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0014	6035	7	6	1	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0015	6037	6	0	2	3	0	1	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0016	6043	6	1	2	0	0	3	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0017	6042	5	2	0	3	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0018	6035	5	5	0	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0019	6039	4	0	2	0	0	2	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0020	6037	4	0	0	4	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0021	6040	4	4	0	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0022	6037	4	0	2	2	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0023	6034	3	3	0	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0024	6036	3	0	1	2	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0025	6034	3	1	0	2	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0026	6035	3	0	3	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0027	6041	3	0	0	3	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0028	6044	3	3	0	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0029	6037	2	0	1	1	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0030	6036	2	0	0	2	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0031	6033	2	0	1	0	0	1	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0032	6036	2	0	0	2	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0033	6037	2	0	0	0	2	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0034	6038	2	1	0	0	1	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0035	6038	2	0	0	0	0	2	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0036	6041	2	0	0	2	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0037	6037	2	0	0	2	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0038	6037	2	1	0	1	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0039	6036	2	0	0	2	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0040	6040	2	0	0	2	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0041	6038	2	0	0	2	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0042	6039	2	0	0	2	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0043	6053	2	0	2	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857