JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNOT7_chr8_17219966_17251857	0/0	t0094	6042	1	0	0	0	1	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0095	6044	1	0	1	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0096	6043	1	0	1	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0097	6044	1	0	0	0	1	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0098	6041	1	1	0	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0099	6035	1	0	0	1	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0100	6037	1	0	0	1	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0101	6037	1	0	1	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0102	6036	1	0	0	1	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0103	6035	1	0	0	0	0	1	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0104	6046	1	1	0	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0105	6043	1	1	0	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0106	6043	1	1	0	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	t0107	6039	1	1	0	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT8_chr5_154853627_154881792	1/1	t0001	1568	243	55	50	105	11	20	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	t0002	1568	48	16	11	14	3	4	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	t0003	1568	24	10	3	10	0	1	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	t0004	1568	13	0	0	12	0	1	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	t0005	1568	8	8	0	0	0	0	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	t0006	1568	1	0	0	0	0	1	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	t0007	1568	1	0	0	0	0	1	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	t0008	1568	1	1	0	0	0	0	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	t0009	1568	1	0	1	0	0	0	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	t0010	1568	1	0	0	1	0	0	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	t0011	1568	1	0	1	0	0	0	copy fasta	CNOT8	chr5	154853627	154881792
CNOT9_chr2_218563839_218602080	0/0	t0001	2918	55	7	15	17	5	11	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/1	t0002	2925	54	3	5	34	2	9	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0003	2926	46	4	10	19	2	11	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0004	2921	36	3	0	31	0	2	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0005	2927	14	3	3	5	1	2	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0006	2904	12	12	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0007	2919	9	2	2	4	0	1	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0008	2928	8	0	2	3	1	2	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0009	2921	6	6	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0010	2922	6	1	0	5	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	1/0	t0011	2921	6	1	2	2	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0012	2925	5	5	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0013	2922	5	5	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0014	2918	4	4	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0015	2923	3	3	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0016	2924	3	1	0	2	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0017	2918	3	3	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0018	2924	3	3	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0019	2917	2	2	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0020	2920	2	2	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0021	2926	2	0	0	2	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0022	2931	2	2	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0023	2922	2	2	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0024	2925	2	1	1	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0025	2925	1	0	0	1	0	0	copy fasta	CNOT9	chr2	218563839	218602080