JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNOT9_chr2_218563839_218602080	0/0	t0026	2904	1	1	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0027	2921	1	1	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0028	2925	1	0	0	1	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0029	2927	1	0	0	1	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0030	2919	1	1	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0031	2925	1	0	0	1	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0032	2926	1	0	0	1	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0033	2926	1	0	0	1	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0034	2926	1	0	0	1	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0035	2926	1	0	0	1	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0036	2929	1	0	0	0	0	1	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0037	2927	1	0	0	1	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0038	2921	1	1	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0039	2928	1	0	0	1	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0040	2932	1	1	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0041	2932	1	1	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0042	2923	1	0	1	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0043	2920	1	1	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0044	2921	1	1	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0045	2925	1	0	1	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0046	2919	1	1	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0047	2920	1	0	0	0	0	1	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0048	2921	1	0	0	1	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0049	2924	1	0	0	0	0	1	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0050	2918	1	0	0	0	0	1	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0051	2906	1	0	0	1	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0052	2919	1	1	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0053	2920	1	1	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0054	2927	1	1	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0055	2925	1	1	0	0	0	0	copy fasta	CNOT9	chr2	218563839	218602080
CNOT9_chr2_218563839_218602080	0/0	t0056	2918	1	0	0	0	1	0	copy fasta	CNOT9	chr2	218563839	218602080
CNPPD1_chr2_219166897_219181925	1/0	t0001	787	262	48	48	135	8	22	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/1	t0002	787	146	34	26	60	8	17	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	t0003	787	10	10	0	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	t0004	786	9	4	0	0	0	5	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	t0005	787	2	2	0	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	t0006	787	2	2	0	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	t0007	787	1	0	0	1	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPY1_chr7_155496129_155551559	0/0	t0001	2083	65	5	20	31	1	8	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0002	2084	46	0	15	23	4	4	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0003	2085	46	4	2	37	0	3	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0004	2084	34	6	8	10	2	8	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0005	2086	22	0	2	16	1	3	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0006	2085	19	0	5	11	1	2	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/1	t0007	2084	18	6	3	6	1	1	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0008	2086	18	1	8	4	0	5	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0009	2084	15	0	0	14	0	1	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0010	2083	15	13	2	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0011	2086	10	1	4	5	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0012	2085	9	7	2	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559