Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCA1_chr9_104776006_104933155	0/0	t0025	3623	2	0	0	2	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0026	3623	2	2	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0027	3622	2	2	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0028	3620	2	0	0	2	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0029	3623	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0030	3619	1	0	1	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0031	3623	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0032	3620	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0033	3621	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0034	3622	1	0	1	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0035	3623	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0036	3621	1	0	0	0	1	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0037	3623	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0038	3624	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0039	3622	1	0	1	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0040	3623	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0041	3624	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0042	3622	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0043	3619	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0044	3619	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0045	3623	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0046	3623	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0047	3623	1	0	0	0	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0048	3620	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0049	3623	1	0	0	0	1	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0050	3620	1	0	0	0	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0051	3624	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0052	3619	1	0	0	0	1	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA2_chr9_137002234_137033237	0/1	t0001	793	211	52	46	79	8	25	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	t0002	793	77	12	27	20	7	11	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	1/0	t0003	793	22	19	1	0	1	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	t0004	793	4	2	1	0	1	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	t0005	793	4	3	1	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	t0006	793	1	0	0	1	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	t0007	793	1	0	0	0	1	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA3_chr16_2270881_2345728	1/1	t0001	1488	174	31	40	59	9	33	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	t0002	1488	32	29	3	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	t0003	1488	25	0	9	14	2	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	t0004	1488	6	6	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	t0005	1488	2	2	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	t0006	1488	2	2	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	t0007	1488	2	2	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	t0008	1488	2	2	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	t0009	1488	1	0	0	1	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	t0010	1488	1	1	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	t0011	1488	1	0	1	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	t0012	1488	1	0	0	0	0	1	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	t0013	1488	1	0	0	0	1	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	t0014	1488	1	1	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	t0015	1488	1	0	1	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728