Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADCYAP1_chr18_899871_917172	0/0	t0108	2727	1	0	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0109	2726	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0110	2727	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0111	2728	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0112	2728	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	1/0	t0113	2728	1	0	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0114	2728	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0115	2727	1	0	0	0	0	1	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0116	2728	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0117	2728	1	0	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0118	2721	1	0	0	1	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0119	2712	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0120	2715	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0121	2715	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0122	2717	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0123	2727	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0124	2718	1	0	1	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADCYAP1_chr18_899871_917172	0/0	t0125	2712	1	1	0	0	0	0	copy fasta	ADCYAP1	chr18	899871	917172
ADD1_chr4_2838844_2935062	1/1	t0001	1741	278	60	61	109	13	33	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0002	1741	9	7	2	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0003	1741	9	9	0	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0004	1741	3	2	1	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0005	1741	3	0	0	3	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0006	1741	3	3	0	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0007	1741	2	1	1	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0008	1741	2	2	0	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0009	1741	1	0	0	1	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0010	1741	1	1	0	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0011	1741	1	0	0	1	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0012	1741	1	1	0	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0013	1741	1	0	1	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0014	1741	1	0	0	0	0	1	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0015	1741	1	0	1	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0016	1741	1	0	1	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0017	1741	1	1	0	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0018	1741	1	1	0	0	0	0	copy fasta	ADD1	chr4	2838844	2935062
ADD1_chr4_2838844_2935062	0/0	t0019	1741	1	0	0	0	1	0	copy fasta	ADD1	chr4	2838844	2935062
ADD2_chr2_70651784_70773200	0/0	t0001	7109	42	6	6	20	2	8	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0002	7106	39	12	7	16	1	3	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/1	t0003	7109	26	1	9	5	4	6	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0004	7109	20	5	4	9	0	2	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0005	7112	16	1	2	8	1	4	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0006	7110	14	4	4	4	1	1	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0007	7108	11	2	4	0	3	2	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0008	7112	10	1	3	2	1	3	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0009	7111	7	6	1	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	1/0	t0010	7110	6	0	0	1	0	4	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0011	7112	4	3	1	0	0	0	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0012	7112	4	0	0	2	0	2	copy fasta	ADD2	chr2	70651784	70773200
ADD2_chr2_70651784_70773200	0/0	t0013	7106	4	0	1	3	0	0	copy fasta	ADD2	chr2	70651784	70773200