JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNPY1_chr7_155496129_155551559	0/0	t0013	2084	8	0	0	8	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0014	2085	7	6	1	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0015	2086	7	1	0	1	3	2	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0016	2082	6	0	0	1	1	4	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0017	2086	6	6	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0018	2086	5	1	1	2	0	1	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0019	2086	5	0	0	5	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0020	2085	4	1	1	1	1	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0021	2086	4	0	0	4	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0022	2084	4	4	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0023	2084	4	1	0	2	0	1	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0024	2085	3	0	2	0	1	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0025	2083	3	1	0	2	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0026	2083	3	2	0	0	1	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0027	2085	3	3	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0028	2086	3	3	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0029	2086	3	0	0	3	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0030	2086	2	2	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0031	2086	2	2	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0032	2082	2	2	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0033	2084	2	2	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0034	2085	2	1	0	1	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0035	2086	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0036	2085	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0037	2084	1	0	0	0	1	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0038	2084	1	0	1	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0039	2085	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0040	2086	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0041	2084	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0042	2083	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0043	2084	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0044	2084	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0045	2085	1	0	0	1	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0046	2084	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0047	2083	1	0	0	0	0	1	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0048	2086	1	0	1	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0049	2084	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	1/0	t0050	2085	1	0	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0051	2086	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0052	2086	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0053	2086	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0054	2086	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	t0055	2086	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY2_chr12_56304844_56320988	1/1	t0001	902	265	78	45	105	14	21	copy fasta	CNPY2	chr12	56304844	56320988
CNPY2_chr12_56304844_56320988	0/0	t0002	902	94	2	19	59	0	14	copy fasta	CNPY2	chr12	56304844	56320988
CNPY2_chr12_56304844_56320988	0/0	t0003	902	8	1	6	0	0	1	copy fasta	CNPY2	chr12	56304844	56320988
CNPY2_chr12_56304844_56320988	0/0	t0004	902	1	1	0	0	0	0	copy fasta	CNPY2	chr12	56304844	56320988
CNPY2_chr12_56304844_56320988	0/0	t0005	902	1	0	1	0	0	0	copy fasta	CNPY2	chr12	56304844	56320988
CNPY2_chr12_56304844_56320988	0/0	t0006	902	1	0	1	0	0	0	copy fasta	CNPY2	chr12	56304844	56320988
CNPY2_chr12_56304844_56320988	0/0	t0007	902	1	1	0	0	0	0	copy fasta	CNPY2	chr12	56304844	56320988