JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNPY2_chr12_56304844_56320988	0/0	t0008	902	1	1	0	0	0	0	copy fasta	CNPY2	chr12	56304844	56320988
CNPY3_chr6_42924480_42944294	1/1	t0001	595	337	87	61	142	11	34	copy fasta	CNPY3	chr6	42924480	42944294
CNPY3_chr6_42924480_42944294	0/0	t0002	593	67	8	19	26	1	13	copy fasta	CNPY3	chr6	42924480	42944294
CNPY3_chr6_42924480_42944294	0/0	t0003	595	1	0	0	1	0	0	copy fasta	CNPY3	chr6	42924480	42944294
CNPY3_chr6_42924480_42944294	0/0	t0004	595	1	0	0	0	0	1	copy fasta	CNPY3	chr6	42924480	42944294
CNPY3_chr6_42924480_42944294	0/0	t0005	595	1	1	0	0	0	0	copy fasta	CNPY3	chr6	42924480	42944294
CNPY3_chr6_42924480_42944294	0/0	t0006	595	1	0	0	1	0	0	copy fasta	CNPY3	chr6	42924480	42944294
CNPY4_chr7_100114634_100130508	1/1	t0001	732	395	93	66	177	13	44	copy fasta	CNPY4	chr7	100114634	100130508
CNPY4_chr7_100114634_100130508	0/0	t0002	731	19	2	4	9	1	3	copy fasta	CNPY4	chr7	100114634	100130508
CNPY4_chr7_100114634_100130508	0/0	t0003	732	1	1	0	0	0	0	copy fasta	CNPY4	chr7	100114634	100130508
CNPY4_chr7_100114634_100130508	0/0	t0004	732	1	0	0	0	0	1	copy fasta	CNPY4	chr7	100114634	100130508
CNP_chr17_41961795_41982740	0/0	t0001	3908	124	4	33	60	7	20	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0002	3908	70	3	21	36	5	5	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0003	3908	36	20	3	10	0	3	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/1	t0004	3907	28	0	3	22	2	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0005	3907	15	1	0	10	2	2	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0006	3907	9	0	4	3	1	1	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0007	3907	9	0	0	6	0	3	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0008	3907	8	0	2	6	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0009	3908	7	0	0	6	0	1	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	1/0	t0010	3907	7	3	3	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0011	3907	6	0	1	5	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0012	3907	6	5	1	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0013	3908	6	6	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0014	3907	6	6	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0015	3907	5	5	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0016	3907	4	4	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0017	3908	4	1	1	0	0	2	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0018	3908	3	0	0	3	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0019	3908	3	0	0	3	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0020	3907	3	2	0	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0021	3908	3	0	0	3	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0022	3907	3	3	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0023	3908	3	3	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0024	3909	3	0	0	2	0	1	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0025	3908	3	3	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0026	3906	2	2	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0027	3907	2	0	0	2	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0028	3906	2	1	1	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0029	3907	2	0	2	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0030	3908	2	0	0	2	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0031	3907	2	0	0	0	1	1	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0032	3907	2	2	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0033	3908	2	2	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0034	3908	2	0	2	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0035	3907	2	2	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0036	3907	2	2	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0037	3908	2	0	2	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0038	3908	2	0	1	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0039	3909	2	0	0	2	0	0	copy fasta	CNP	chr17	41961795	41982740