JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNP_chr17_41961795_41982740	0/0	t0040	3907	1	0	0	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0041	3907	1	0	0	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0042	3907	1	0	0	0	0	1	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0043	3906	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0044	3907	1	0	0	0	0	1	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0045	3906	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0046	3906	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0047	3906	1	0	0	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0048	3907	1	0	0	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0049	3907	1	0	0	0	0	1	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0050	3908	1	0	0	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0051	3908	1	0	1	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0052	3908	1	0	1	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0053	3908	1	0	0	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0054	3907	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0055	3907	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0056	3907	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0057	3908	1	0	1	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0058	3908	1	0	0	0	0	1	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0059	3907	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0060	3907	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0061	3908	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0062	3907	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0063	3908	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0064	3907	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0065	3907	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0066	3908	1	0	1	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0067	3907	1	0	1	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0068	3908	1	0	0	0	0	1	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0069	3908	1	0	0	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0070	3908	1	0	1	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0071	3909	1	0	0	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0072	3909	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0073	3908	1	0	0	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0074	3907	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	t0075	3907	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNR1_chr6_88134864_88171347	1/0	t0001	4601	126	10	22	73	4	16	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0002	4602	107	3	23	73	0	8	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0003	4602	68	27	11	15	5	10	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/1	t0004	4602	10	1	4	0	3	1	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0005	4602	10	0	3	1	2	4	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0006	4603	8	1	3	0	1	3	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0007	4601	6	5	1	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0008	4602	5	5	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0009	4602	5	3	1	0	1	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0010	4602	4	4	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0011	4602	4	4	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0012	4602	4	4	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0013	4602	4	4	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0014	4601	4	4	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347