JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CNR1_chr6_88134864_88171347	0/0	t0015	4602	3	0	0	3	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0016	4601	3	3	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0017	4602	2	1	1	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0018	4602	2	2	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0019	4601	2	1	1	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0020	4602	2	2	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0021	4602	2	1	1	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0022	4601	1	0	0	1	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0023	4602	1	1	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0024	4602	1	1	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0025	4601	1	0	0	1	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0026	4601	1	0	0	1	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0027	4601	1	0	0	1	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0028	4602	1	0	0	1	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0029	4602	1	1	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0030	4602	1	0	0	1	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0031	4602	1	0	0	1	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0032	4602	1	0	0	1	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0033	4601	1	1	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0034	4601	1	0	1	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0035	4601	1	1	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0036	4587	1	0	0	1	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0037	4602	1	0	1	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	t0038	4603	1	0	1	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR2_chr1_23865515_23918362	0/1	t0001	4189	74	18	12	25	2	16	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0002	4182	27	2	5	12	5	3	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0003	4190	21	2	5	10	1	3	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0004	4185	21	0	5	9	2	5	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0005	4190	16	7	7	2	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0006	4192	6	4	2	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0007	4183	6	0	1	5	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0008	4188	5	4	0	1	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0009	4186	4	0	0	4	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0010	4188	4	4	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0011	4191	3	2	0	1	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0012	4192	3	1	2	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0013	4184	3	3	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0014	4182	3	0	3	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0015	4184	2	2	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0016	4188	2	0	0	2	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0017	4191	2	0	0	2	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0018	4191	2	2	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0019	4189	2	2	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0020	4185	2	2	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0021	4186	2	2	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0022	4183	2	2	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0023	4184	2	0	0	2	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	1/0	t0024	4183	2	1	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0025	4184	2	0	0	1	0	1	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	t0026	4186	2	0	0	1	0	1	copy fasta	CNR2	chr1	23865515	23918362